RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 NME2P22392 152 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 TRHRP34981 398 aaPredicted RBP12.41□□□□□ -0.42
CPSF4-210ENST00000469897 SMSP52788 366 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 SLBPQ14493 270 aaKnown RBP eCLIP12.41□□□□□ -0.42
CPSF4-210ENST00000469897 FBXO48Q5FWF7 155 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 TMIGD1Q6UXZ0 262 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 C3P1Q6ZMU1 363 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 CAPN12Q6ZSI9 719 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 FRA10AC1Q70Z53 315 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 DOLPP1Q86YN1 238 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 SULF2Q8IWU5 870 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 CCT6BQ92526 530 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 ESAMQ96AP7 390 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 RHBDF1Q96CC6 855 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 VPS39Q96JC1 886 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 CAB39LQ9H9S4 337 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 FBXW2Q9UKT8 454 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 MEMO1Q9Y316 297 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 SAR1BQ9Y6B6 198 aa12.41□□□□□ -0.42
CPSF4-210ENST00000469897 DOCK10Q96BY6 2186 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ITPR2Q14571 2701 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 NUP210LQ5VU65 1888 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 TRBV11-1A0A0K0K1C0 115 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 MYOCOSA0A1B0GUC4 107 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 FCHO1O14526 889 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ERI3O43414 337 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 COX6B1P14854 86 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PPP2R1BP30154 601 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 HNRNPH1P31943 449 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 RFC3P40938 356 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PAFAH1B1P43034 410 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 RPL21P46778 160 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 SLC6A12P48065 614 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 CLCN2P51788 898 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 HNRNPFP52597 415 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PLA2G16P53816 162 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 SLC12A2P55011 1212 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 STXBP1P61764 594 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 TGFBIQ15582 683 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 MDGA2Q7Z553 956 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 FGD2Q7Z6J4 655 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 CHERPQ8IWX8 916 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 KLHDC8AQ8IYD2 350 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ZBED8Q8IZ13 594 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 GHDCQ8N2G8 530 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 APCDD1LQ8NCL9 501 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 TMEM52Q8NDY8 209 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 B3GNT7Q8NFL0 401 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 AGAP11Q8TF27 550 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 MS4A6EQ96DS6 147 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PDLIM2Q96JY6 352 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PHF12Q96QT6 1004 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 KRT12Q99456 494 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 MCMBPQ9BTE3 642 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 CAPS2Q9BXY5 557 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 RHOJQ9H4E5 214 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 LIN28AQ9H9Z2 209 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 GRPEL1Q9HAV7 217 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 PRTFDC1Q9NRG1 225 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ZNF490Q9ULM2 529 aaPredicted RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ASB1Q9Y576 335 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 MDC1Q14676 2089 aaKnown RBP12.4□□□□□ -0.42
CPSF4-210ENST00000469897 CENPEQ02224 2701 aa12.4□□□□□ -0.42
CPSF4-210ENST00000469897 ANKDD1BA6NHY2 528 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 CXorf49A8MYA2 514 aaPredicted RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 E7ESA3 106 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 TGFBR3LH3BV60 316 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 C19orf84I3L1E1 186 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 CLDN4O14493 209 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 PEX1O43933 1283 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 PRAMEF4O60810 478 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 ITGA10O75578 1167 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 CLDN14O95500 239 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 TBX6O95947 436 aaPredicted RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 CCDC166P0CW27 439 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 ZNF24P17028 368 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 AGAP20933 346 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 SSTR1P30872 391 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 PTGER1P34995 402 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 KIR3DL1P43629 444 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 MEOX1P50221 254 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 SLC13A2Q13183 592 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 PRAMEF9Q5VWM5 478 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 ADNP2Q6IQ32 1131 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 C16orf47Q6ZP98 133 aaPredicted RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 VN1R5Q7Z5H4 357 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 ADAMTSL2Q86TH1 951 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 GPSM1Q86YR5 675 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 KRT78Q8N1N4 520 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 ARMC10Q8N2F6 343 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 TMEM156Q8N614 296 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 FAM47BQ8NA70 645 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 PYROXD1Q8WU10 500 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 SREK1Q8WXA9 508 aaKnown RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 GAL3ST3Q96A11 431 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 MTFMTQ96DP5 389 aaKnown RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 QRFPRQ96P65 431 aa12.39□□□□□ -0.43
CPSF4-210ENST00000469897 NAPGQ99747 312 aaPredicted RBP12.39□□□□□ -0.43
CPSF4-210ENST00000469897 NPLQ9BXD5 320 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms