RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MMACHCQ9Y4U1 282 aa15.52■□□□□ 0.08
CCDC28B-204ENST00000469003 FAM187AA6NFU0 413 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 FANCGO15287 622 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 EIF3HO15372 352 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 SLC19A2O60779 497 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 PIAS1O75925 651 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 TPP2P29144 1249 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 MLF1P58340 268 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 BTN3A2P78410 334 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 CALCOCO2Q13137 446 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 CDKL4Q5MAI5 379 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF468Q5VIY5 522 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 SP5Q6BEB4 398 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 GALNTL5Q7Z4T8 443 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 TCAIMQ8N3R3 496 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF808Q8N4W9 903 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 CDKL2Q92772 493 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 MARVELD3Q96A59 401 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 MS4A6EQ96DS6 147 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 TSPAN17Q96FV3 270 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 SEC16BQ96JE7 1060 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 FAR2Q96K12 515 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 ERP44Q9BS26 406 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 NPLQ9BXD5 320 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 TRIM45Q9H8W5 580 aaPredicted RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 CAB39LQ9H9S4 337 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 WHRNQ9P202 907 aa15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 MTO1Q9Y2Z2 717 aaKnown RBP15.51■□□□□ 0.07
CCDC28B-204ENST00000469003 ARHGAP10A1A4S6 786 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 LRIT2A6NDA9 550 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 NCF1BA6NI72 391 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 A8MUA0 341 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 NCF1CA8MVU1 366 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CXorf49A8MYA2 514 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CLEC3AO75596 197 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 SLC25A12O75746 678 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 NCF1P14598 390 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 SSTR1P30872 391 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 HNRNPH1P31943 449 aaKnown RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 GGT5P36269 586 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CYB561P49447 251 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 MRPS25P82663 173 aaKnown RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 RUNX2Q13950 521 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 RPTNQ6XPR3 784 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CYS1Q717R9 158 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 MRGPRGQ86SM5 289 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 GPSM1Q86YR5 675 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 ARMC10Q8N2F6 343 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CCT6BQ92526 530 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 MAGED4Q96JG8 741 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 PDLIM2Q96JY6 352 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 GPR22Q99680 433 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CPNE1Q99829 537 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 TMEM79Q9BSE2 394 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 UNKQ9C0B0 810 aaKnown RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 DPH5Q9H2P9 285 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 EHD1Q9H4M9 534 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 CNOT10Q9H9A5 744 aaKnown RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 SAYSD1Q9NPB0 183 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 DNAJC11Q9NVH1 559 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 WWOXQ9NZC7 414 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 TXNDC16Q9P2K2 825 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 SH3BGRL2Q9UJC5 107 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 PYCARDQ9ULZ3 195 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF835Q9Y2P0 537 aa15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 KLF2Q9Y5W3 355 aaPredicted RBP15.5■□□□□ 0.07
CCDC28B-204ENST00000469003 A0A088AWK7 358 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 A0A0G2JN53 185 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ANKDD1BA6NHY2 528 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 NPIPA5E9PKD4 350 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 FCHO1O14526 889 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 TAPBPO15533 448 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 PHGDHO43175 533 aaKnown RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ERI3O43414 337 aaKnown RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 NME2P1O60361 137 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 KRT38O76015 456 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 CCDC166P0CW27 439 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 CD1DP15813 335 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 POU3F2P20265 443 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF10P21506 573 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 NME2P22392 152 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 HPDP32754 393 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 TRHRP34981 398 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 RAB38P57729 211 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ATP6V0D1P61421 351 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 TERF2Q15554 542 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 C3AR1Q16581 482 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 MAPKAPK3Q16644 382 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ADPRMQ3LIE5 342 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 SULT1C3Q6IMI6 304 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 Q6ZPB1 254 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 MAATS1Q7Z4T9 603 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ZNF227Q86WZ6 799 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 SIAH3Q8IW03 269 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 SCUBE1Q8IWY4 988 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 SPATA6LQ8N4H0 392 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 APCDD1LQ8NCL9 501 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 B3GNT7Q8NFL0 401 aa15.49■□□□□ 0.07
CCDC28B-204ENST00000469003 ADAMTS18Q8TE60 1221 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms