RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 SPATA17Q96L03 361 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 COPS8Q99627 209 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 HIST1H2AJQ99878 128 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 H2AFJQ9BTM1 129 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.94■□□□□ 0.623e-7■■■■□ 22.6
SDF4-205ENST00000465727 RRAGCQ9HB90 399 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 IL26Q9NPH9 171 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 GABRQQ9UN88 632 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 ZSCAN5BA6NJL1 495 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 IFNA14P01570 189 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 CNR2P34972 360 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 XCR1P46094 333 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 C1DQ13901 141 aaKnown RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 DOC2BQ14184 412 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 TRIM71Q2Q1W2 868 aaKnown RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 TMEM201Q5SNT2 666 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 SAXO2Q658L1 398 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 PLET1Q6UQ28 207 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 LYPD8Q6UX82 237 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 TTC9BQ8N6N2 239 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 YIPF7Q8N8F6 280 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 IL17RCQ8NAC3 791 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 ATAD1Q8NBU5 361 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 OR5H6Q8NGV6 325 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 VPS35Q96QK1 796 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 GTPBP2Q9BX10 602 aaKnown RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 ABCB9Q9NP78 766 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 ACER3Q9NUN7 267 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 DNAJC11Q9NVH1 559 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 LHX3Q9UBR4 397 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 DNMT3LQ9UJW3 386 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 GLYATL1P3A0A0U1RQE8 302 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 A0A0X1KG70 313 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 TPST2O60704 377 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 CD160O95971 181 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ALPIP09923 528 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 CD52P31358 61 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 KIR2DL3P43628 341 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ACSM2AQ08AH3 577 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ARHGEF6Q15052 776 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 GPR19Q15760 415 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 PTCHD3Q3KNS1 767 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 LCN1P1Q5VSP4 162 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 LIPJQ5W064 366 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ACSM2BQ68CK6 577 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 PROKR2Q8NFJ6 384 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 MARVELD3Q96A59 401 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 DIRAS2Q96HU8 199 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 CITED4Q96RK1 184 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 BEX2Q9BXY8 128 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ATP13A2Q9NQ11 1180 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ING3Q9NXR8 418 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 SLC6A14Q9UN76 642 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 FADS2P1A8MWK0 482 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 POLR1CO15160 346 aaPredicted RBP18.93■□□□□ 0.62
SDF4-205ENST00000465727 PCDH7O60245 1069 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 HCN1O60741 890 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 GADD45GO95257 159 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 HLA-DQB1P01920 261 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 ALAS2P22557 587 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 NSG1P42857 185 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 GAB1Q13480 694 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 MBTPS1Q14703 1052 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 FAM110CQ1W6H9 321 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 RNF219Q5W0B1 726 aaPredicted RBP18.93■□□□□ 0.62
SDF4-205ENST00000465727 KLHL17Q6TDP4 642 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 DPY19L3Q6ZPD9 716 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 SLC34A3Q8N130 599 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 NXPE1Q8N323 547 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 PIH1D2Q8WWB5 315 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 DEDD2Q8WXF8 326 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 GTPBP3Q969Y2 492 aaKnown RBP18.93■□□□□ 0.62
SDF4-205ENST00000465727 TCF25Q9BQ70 676 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 MIXL1Q9H2W2 232 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 CWH43Q9H720 699 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 SYNDIG1Q9H7V2 258 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 NDOR1Q9UHB4 597 aa18.93■□□□□ 0.62
SDF4-205ENST00000465727 DSPPQ9NZW4 1301 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 A0A1W2PQ67 120 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 A0A1W2PQL4 384 aaPredicted RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 B8ZZF3 427 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 RNASET2O00584 256 aaKnown RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 OPN1SWP03999 348 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 TSPAN19P0C672 248 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 HSD3B1P14060 373 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 TNFRSF1BP20333 461 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 HSD3B2P26439 372 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 OR1E2P47887 323 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 AP2S1P53680 142 aaPredicted RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 ZXDCQ2QGD7 858 aaPredicted RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 LDLRAD1Q5T700 205 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 TRIM48Q8IWZ4 208 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 LAS2Q8IYD9 372 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 NANOGP1Q8N7R0 232 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 AQP11Q8NBQ7 271 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 AP3S1Q92572 193 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 C11orf24Q96F05 449 aaPredicted RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 SAMD11Q96NU1 681 aa18.92■□□□□ 0.62
SDF4-205ENST00000465727 SPATA6Q9NWH7 488 aaPredicted RBP18.92■□□□□ 0.62
SDF4-205ENST00000465727 RPL36Q9Y3U8 105 aaKnown RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms