RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 LINC00696Q6ZRV3 163 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PGAP1Q75T13 922 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TRAPPC11Q7Z392 1133 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SMIM15Q7Z3B0 74 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TDRPQ86YL5 185 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CENPLQ8N0S6 344 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SVOPQ8N4V2 548 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 AOPEPQ8N6M6 819 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 Q8N9G6 341 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NETO2Q8NC67 525 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 OR52H1Q8NGJ2 320 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DTX3LQ8TDB6 740 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ACTRT1Q8TDG2 376 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PPP4R1Q8TF05 950 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 GDPD5Q8WTR4 605 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MITD1Q8WV92 249 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CFHR4Q92496 578 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PIK3R3Q92569 461 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ADIPOR1Q96A54 375 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RNF125Q96EQ8 232 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PLEKHA8Q96JA3 519 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF641Q96N77 438 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MYOCQ99972 504 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CPPED1Q9BRF8 314 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 C11orf70Q9BRQ4 267 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF577Q9BSK1 485 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 FUCA2Q9BTY2 467 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TRAF4Q9BUZ4 470 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TPPP3Q9BW30 176 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PCDHAC1Q9H158 963 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 OR10A5Q9H207 317 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PPA2Q9H2U2 334 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 VCX2Q9H322 139 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 BOLA2Q9H3K6 86 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 WDCPQ9H6R7 721 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CNOT10Q9H9A5 744 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ZCCHC3Q9NUD5 404 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MTMR10Q9NXD2 777 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TAS2R1Q9NYW7 299 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MLXQ9UH92 298 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DNPEPQ9ULA0 475 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MGAT4AQ9UM21 535 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SORCS3Q9UPU3 1222 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 UTP11Q9Y3A2 253 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MMACHCQ9Y4U1 282 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NUBP2Q9Y5Y2 271 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 AK9Q5TCS8 1911 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MROH7Q68CQ1 1323 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DOCK2Q92608 1830 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 A0A1W2PR48 441 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CCDC160A6NGH7 325 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 METTL15A6NJ78 407 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 OR6C76A6NM76 312 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CLCA1A8K7I4 914 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 LOC110117498-PIK3R3F6TDL0 507 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 AGPSO00116 658 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RAB27BO00194 218 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CES2O00748 559 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 HBP1O60381 514 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 POP7O75817 140 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ACTL6BO94805 426 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SRMP19623 302 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DRD5P21918 477 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NR4A1P22736 598 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 DTYMKP23919 212 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 BTDP43251 543 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RPS5P46782 204 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 GLRBP48167 497 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ZNF75DP51815 510 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 EMP2P54851 167 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NRG3P56975 720 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SESN2P58004 480 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SPIBQ01892 262 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 NHLH1Q02575 133 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 GALNT2Q10471 571 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PDCLQ13371 301 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TP53BP2Q13625 1128 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MESDQ14696 234 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RAB39AQ14964 217 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 UAP1Q16222 522 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SYT16Q17RD7 645 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 CHRFAM7AQ494W8 412 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TEX44Q53QW1 395 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 UBE2UQ5VVX9 321 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 PAPD7Q5XG87 772 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 RWDD4Q6NW29 188 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TSSK4Q6SA08 328 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ZDHHC24Q6UX98 284 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 H1FNTQ75WM6 255 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 HDDC2Q7Z4H3 204 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ERI1Q8IV48 349 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 FAM89BQ8N5H3 189 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MCUQ8NE86 351 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 AENQ8WTP8 325 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 ATOH1Q92858 354 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC41A2Q96JW4 573 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 TEPSINQ96N21 525 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 MAPKAP1Q9BPZ7 522 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SLC2A11Q9BYW1 496 aa4.61□□□□□ -1.67
CCDC88A-209ENST00000456975 SPNS1Q9H2V7 528 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms