RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 FRRS1Q6ZNA5 592 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TRIM46Q7Z4K8 759 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 DENND1CQ8IV53 801 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 GHDCQ8N2G8 530 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 LILRB1Q8NHL6 650 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 PIGXQ8TBF5 258 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 SLC6A17Q9H1V8 727 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 ACP6Q9NPH0 428 aa12.86□□□□□ -0.35
USP40-208ENST00000450966 TEX10Q9NXF1 929 aaPredicted RBP12.86□□□□□ -0.35
USP40-208ENST00000450966 CNTNAP1P78357 1384 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 ZNF254O75437 659 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 GNSP15586 552 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PRKXP51817 358 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 ZNF460Q14592 562 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 COL13A1Q5TAT6 717 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 TIGD3Q6B0B8 471 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 TMEM192Q8IY95 271 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 KCNJ9Q92806 393 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RNF31Q96EP0 1072 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PHPT1Q9NRX4 125 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 SOBPA7XYQ1 873 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 OR10H2O60403 315 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 BUD31P41223 144 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 GBX2P52951 348 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 ZNF311Q5JNZ3 666 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 WASH2PQ6VEQ5 465 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 SLC35F3Q8IY50 421 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 SPATA22Q8NHS9 363 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 BRSK1Q8TDC3 778 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 DENND1AQ8TEH3 1009 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 DNAJC19Q96DA6 116 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 FUBP3Q96I24 572 aaKnown RBP eCLIP12.85□□□□□ -0.35
USP40-208ENST00000450966 BTN2A3PQ96KV6 586 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 SNRNP25Q9BV90 132 aaKnown RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 NKX6-2Q9C056 277 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 SEC14L3Q9UDX4 400 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RPS10-NUDT3A0A1W2PQS6 291 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 C9JVG2 144 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RAB3DO95716 219 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 CDH5P33151 784 aaPredicted RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 RPS10P46783 165 aaKnown RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 NRROSQ86YC3 692 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 CLRN3Q8NCR9 226 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 HAS1Q92839 578 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 MFSD14AQ96MC6 490 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RNF32Q9H0A6 362 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 MYNNQ9NPC7 610 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 SLC27A5Q9Y2P5 690 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 OR10H1Q9Y4A9 318 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 ACTL7AQ9Y615 435 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 A0A1W2PP18 115 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 ADRB1P08588 477 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PPP3CBP16298 524 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RAB41Q5JT25 222 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 OR10H4Q8NGA5 316 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 ZFAND1Q8TCF1 268 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PXYLP1Q8TE99 480 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 LPPQ93052 612 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 LRATO95237 230 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 BMP4P12644 408 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 MRPS5P82675 430 aaKnown RBP12.85□□□□□ -0.35
USP40-208ENST00000450966 MEDAGQ5VYS4 303 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 LINC00471Q8N535 108 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 COL26A1Q96A83 441 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 MFFQ9GZY8 342 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 OPA3Q9H6K4 179 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 RBPJLQ9UBG7 517 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PCDHGB7Q9Y5F8 929 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 PCDHAC2Q9Y5I4 1007 aa12.85□□□□□ -0.35
USP40-208ENST00000450966 MAGEB17A8MXT2 336 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 F5H5P2 479 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 BCKDHAP12694 445 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GBE1Q04446 702 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SPCS2Q15005 226 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 HECTD2Q5U5R9 776 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GALNTL5Q7Z4T8 443 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 PIGZQ86VD9 579 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 NAT8LQ8N9F0 302 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 PAPD5Q8NDF8 572 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 LRRC46Q96FV0 321 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 BTBD1Q9H0C5 482 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 ADAM7Q9H2U9 754 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 NAP1L6A6NFF2 107 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 SH3BGRLO75368 114 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 PIGRP01833 764 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 TRBC1P01850 177 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 TLE2Q04725 743 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 DPY19L1Q2PZI1 675 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 AVL9Q8NBF6 648 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 B3GNT5Q9BYG0 378 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 KCNJ16Q9NPI9 418 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 CYP8B1Q9UNU6 501 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 NUMBLQ9Y6R0 609 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 CHD2O14647 1828 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 HOXC11O43248 304 aaPredicted RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 GATCO43716 136 aaKnown RBP12.84□□□□□ -0.35
USP40-208ENST00000450966 JRKO75564 520 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 IFNA1P01562 189 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 CHRNB2P17787 502 aa12.84□□□□□ -0.35
USP40-208ENST00000450966 GSTM3P21266 225 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms