RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 UTP23Q9BRU9 249 aaKnown RBP14.34□□□□□ -0.11
CHD3-205ENST00000449744 LRRC1Q9BTT6 524 aa14.34□□□□□ -0.11
CHD3-205ENST00000449744 EFCAB11Q9BUY7 163 aa14.34□□□□□ -0.11
CHD3-205ENST00000449744 NPLQ9BXD5 320 aaPredicted RBP14.34□□□□□ -0.11
CHD3-205ENST00000449744 NUDT4Q9NZJ9 180 aa14.34□□□□□ -0.11
CHD3-205ENST00000449744 COPG2Q9UBF2 871 aa14.34□□□□□ -0.11
CHD3-205ENST00000449744 PTBP2Q9UKA9 531 aaKnown RBP14.34□□□□□ -0.11
CHD3-205ENST00000449744 SCN2AQ99250 2005 aa14.34□□□□□ -0.11
CHD3-205ENST00000449744 USP9YO00507 2555 aaPredicted RBP14.33□□□□□ -0.11
CHD3-205ENST00000449744 USP9XQ93008 2570 aaPredicted RBP14.33□□□□□ -0.11
CHD3-205ENST00000449744 RELNP78509 3460 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 LRIT2A6NDA9 550 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 SUPT3HB4E1H0 165 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 C4orf51C9J302 202 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 FAM227AF5H4B4 570 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 B3GALT2O43825 422 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 SUPT3HO75486 399 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 LDLRP01130 860 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 SLC35E2BP0CK96 405 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 HNRNPH1P31943 449 aaKnown RBP14.33□□□□□ -0.12
CHD3-205ENST00000449744 PHBP35232 272 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 PLA2G16P53816 162 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 OC90Q02509 493 aaPredicted RBP14.33□□□□□ -0.12
CHD3-205ENST00000449744 IRF8Q02556 426 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 GUCY2DQ02846 1103 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 TGM3Q08188 693 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 LAPTM5Q13571 262 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 DOC2AQ14183 400 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 WHAMMP3Q1A5X7 153 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 ZNF766Q5HY98 468 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 CEP128Q6ZU80 1094 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 LRRC70Q7Z2Q7 622 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 OR2L5Q8NG80 312 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 DNAJB8Q8NHS0 232 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 ZNF592Q92610 1267 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 MS4A6EQ96DS6 147 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 CD244Q9BZW8 370 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 REXO4Q9GZR2 422 aaKnown RBP14.33□□□□□ -0.12
CHD3-205ENST00000449744 AICDAQ9GZX7 198 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 COPS7BQ9H9Q2 264 aaPredicted RBP14.33□□□□□ -0.12
CHD3-205ENST00000449744 ANKRD10Q9NXR5 420 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 MTRF1LQ9UGC7 380 aaKnown RBP14.33□□□□□ -0.12
CHD3-205ENST00000449744 ACOT9Q9Y305 439 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 MMACHCQ9Y4U1 282 aa14.33□□□□□ -0.12
CHD3-205ENST00000449744 SPENQ96T58 3664 aaKnown RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 TCRBV16S1A1N1A0A5B0 115 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 SAGE2PA6NJ88 616 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 GABRR3A8MPY1 467 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 A8MUA0 341 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 CLDN4O14493 209 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 KERAO60938 352 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 CD46P15529 392 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 GMPRP36959 345 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 PER3P56645 1201 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 RAB38P57729 211 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 CHIT1Q13231 466 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 TUBA3CQ13748 450 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 RUNX2Q13950 521 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 UAP1Q16222 522 aaPredicted RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 ZNF324BQ6AW86 544 aaPredicted RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 TUBA3EQ6PEY2 450 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 GFRALQ6UXV0 394 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 CCDC91Q7Z6B0 441 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 ISCA2Q86U28 154 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 RPS19BP1Q86WX3 136 aaKnown RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 LURAP1LQ8IV03 231 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 LGI4Q8N135 537 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 HORMAD2Q8N7B1 307 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 ELP5Q8TE02 316 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 ADAMTS18Q8TE60 1221 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 UBE2E3Q969T4 207 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 WDR34Q96EX3 536 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 CDCP1Q9H5V8 836 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 NECTIN3Q9NQS3 549 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 PRTFDC1Q9NRG1 225 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 OPTCQ9UBM4 332 aa14.32□□□□□ -0.12
CHD3-205ENST00000449744 ZNF490Q9ULM2 529 aaPredicted RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 MRPS33Q9Y291 106 aaKnown RBP14.32□□□□□ -0.12
CHD3-205ENST00000449744 A0A087X1B8 175 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 IGKV3D-11A0A0A0MRZ8 115 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 WIPF3A6NGB9 483 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 SYCE1LA8MT33 242 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 UBXN8O00124 270 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 LRRTM2O43300 516 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 PRAMEF4O60810 478 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 CD96P40200 585 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 MSH2P43246 934 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 KCNC1P48547 511 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 ST13P50502 369 aaKnown RBP14.31□□□□□ -0.12
CHD3-205ENST00000449744 MTTPP55157 894 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 DLG1Q12959 904 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 SLC13A2Q13183 592 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 BMPR2Q13873 1038 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 RCN2Q14257 317 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 OR1C1Q15619 314 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 FAM83EQ2M2I3 478 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 MROH9Q5TGP6 573 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 PRAMEF9Q5VWM5 478 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 KIF2BQ8N4N8 673 aa14.31□□□□□ -0.12
CHD3-205ENST00000449744 KCTD4Q8WVF5 259 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms