RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CD22P20273 847 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 RAB10P61026 200 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 CDKL4Q5MAI5 379 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 ZNF468Q5VIY5 522 aaPredicted RBP19.45■□□□□ 0.7
SDC1-205ENST00000447124 SPINK14Q6IE38 97 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 SULT1C3Q6IMI6 304 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 ZNF572Q7Z3I7 529 aaPredicted RBP19.45■□□□□ 0.7
SDC1-205ENST00000447124 CCDC25Q86WR0 208 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 TCAIMQ8N3R3 496 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 SUN3Q8TAQ9 357 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 FBF1Q8TES7 1133 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 KIAA1191Q96A73 305 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 PRDM9Q9NQV7 894 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 WWOXQ9NZC7 414 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 CLDN16Q9Y5I7 305 aa19.45■□□□□ 0.7
SDC1-205ENST00000447124 STK16O75716 305 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 SPRP35270 261 aaPredicted RBP19.44■□□□□ 0.7
SDC1-205ENST00000447124 STXBP1P61764 594 aaKnown RBP19.44■□□□□ 0.7
SDC1-205ENST00000447124 SLC7A5Q01650 507 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 CAV1Q03135 178 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 DOC2AQ14183 400 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 CMC1Q7Z7K0 106 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 ISCA2Q86U28 154 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 RPS19BP1Q86WX3 136 aaKnown RBP19.44■□□□□ 0.7
SDC1-205ENST00000447124 KRT78Q8N1N4 520 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 TMEM52Q8NDY8 209 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 GAL3ST3Q96A11 431 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 WDR34Q96EX3 536 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 CAPS2Q9BXY5 557 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 PHACTR1Q9C0D0 580 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 CROCCQ5TZA2 2017 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 TEX15Q9BXT5 2789 aa19.44■□□□□ 0.7
SDC1-205ENST00000447124 GABRR3A8MPY1 467 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 ERI3O43414 337 aaKnown RBP19.43■□□□□ 0.7
SDC1-205ENST00000447124 CLEC3AO75596 197 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 CRYABP02511 175 aaKnown RBP19.43■□□□□ 0.7
SDC1-205ENST00000447124 MYBL2P10244 700 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 HNRNPFP52597 415 aaKnown RBP19.43■□□□□ 0.7
SDC1-205ENST00000447124 EFTUD2Q15029 972 aaKnown RBP eCLIP19.43■□□□□ 0.78e-9■■■■■ 27
SDC1-205ENST00000447124 OR1C1Q15619 314 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 ADPRMQ3LIE5 342 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 C1QL3Q5VWW1 255 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 ZNF787Q6DD87 383 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 GFRALQ6UXV0 394 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 PDPRQ8NCN5 879 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 TTLQ8NG68 377 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 CCT6BQ92526 530 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 SCMH1Q96GD3 660 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 UTP23Q9BRU9 249 aaKnown RBP19.43■□□□□ 0.7
SDC1-205ENST00000447124 RAB17Q9H0T7 212 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 EHD1Q9H4M9 534 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 KLHL1Q9NR64 748 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 CD274Q9NZQ7 290 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 PCDHGB6Q9Y5F9 930 aa19.43■□□□□ 0.7
SDC1-205ENST00000447124 ITPR2Q14571 2701 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 ESYT3A0FGR9 886 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 SAGE2PA6NJ88 616 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 TGFBR3LH3BV60 316 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 PSMD12O00232 456 aaPredicted RBP19.42■□□□□ 0.7
SDC1-205ENST00000447124 CLGNO14967 610 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 NEURL1O76050 574 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 UNC5CO95185 931 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 SLC35E2BP0CK96 405 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 PLA2G16P53816 162 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 XKR6Q5GH73 641 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 FJX1Q86VR8 437 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 SCUBE1Q8IWY4 988 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 LGI4Q8N135 537 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 SLC5A8Q8N695 610 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 SNX31Q8N9S9 440 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 RELTQ969Z4 430 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 FAR2Q96K12 515 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 NPLQ9BXD5 320 aaPredicted RBP19.42■□□□□ 0.7
SDC1-205ENST00000447124 PITHD1Q9GZP4 211 aaPredicted RBP19.42■□□□□ 0.7
SDC1-205ENST00000447124 ALG9Q9H6U8 611 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 CNOT10Q9H9A5 744 aaKnown RBP19.42■□□□□ 0.7
SDC1-205ENST00000447124 IGSF5Q9NSI5 407 aa19.42■□□□□ 0.7
SDC1-205ENST00000447124 HMX2A2RU54 273 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ANKDD1BA6NHY2 528 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 CCNT2O60583 730 aaKnown RBP19.41■□□□□ 0.7
SDC1-205ENST00000447124 ZG16O60844 167 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 TFEBP19484 476 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 PPP2R1BP30154 601 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 MLF1P58340 268 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 TAS2R50P59544 299 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ZRSR2Q15696 482 aaKnown RBP19.41■□□□□ 0.7
SDC1-205ENST00000447124 PDK4Q16654 411 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ABHD17CQ6PCB6 329 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 UBE3DQ7Z6J8 389 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ZNF227Q86WZ6 799 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 STAG3L4Q8TBR4 150 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 EXT2Q93063 718 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 NXNL1Q96CM4 212 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 PTCD3Q96EY7 689 aaKnown RBP19.41■□□□□ 0.7
SDC1-205ENST00000447124 SEC16BQ96JE7 1060 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 F2RL3Q96RI0 385 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 ATOH8Q96SQ7 321 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 LRRC1Q9BTT6 524 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 CD244Q9BZW8 370 aa19.41■□□□□ 0.7
SDC1-205ENST00000447124 REXO4Q9GZR2 422 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms