RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SPRY4Q9C004 299 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 DDX31Q9H8H2 851 aaKnown RBP14.97□□□□□ -0.01
USP40-206ENST00000443711 LRTM1Q9HBL6 345 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 ZNF304Q9HCX3 659 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 ASCL3Q9NQ33 180 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 FOXJ2Q9P0K8 574 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 ADAM29Q9UKF5 820 aa14.97□□□□□ -0.01
USP40-206ENST00000443711 FER1L5A0AVI2 2057 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ATP6AP2A0A1C7CYW4 349 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 GMNCA6NCL1 334 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 SGK494L7N484 410 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 MEN1O00255 615 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 RTCAO00442 366 aaKnown RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 SDHDO14521 159 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ZNF195O14628 629 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 LSM1O15116 133 aaKnown RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 B3GALT2O43825 422 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 PEX11AO75192 247 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ATP6AP2O75787 350 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 MYO1DO94832 1006 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 SCELO95171 688 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 DLGAP3O95886 979 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 B3GALT4O96024 378 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 CCNYL3P0C7X3 344 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 AGXTP21549 392 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 HIST1H1TP22492 207 aaPredicted RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 RORAP35398 523 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 DCDP81605 110 aaKnown RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 COL9A2Q14055 689 aaPredicted RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 GALNTL6Q49A17 601 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ATP6AP1LQ52LC2 224 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 SDK2Q58EX2 2172 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 EPGNQ6UW88 154 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 C6orf15Q6UXA7 325 aaPredicted RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 PRSS41Q7RTY9 318 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 COMMD6Q7Z4G1 85 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 NUDT13Q86X67 352 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ZFAND4Q86XD8 727 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 PDSS2Q86YH6 399 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 DSELQ8IZU8 1212 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ACOT4Q8N9L9 421 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 GALNT6Q8NCL4 622 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 COL26A1Q96A83 441 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 APIPQ96GX9 242 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 GBP5Q96PP8 586 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 NPLQ9BXD5 320 aaPredicted RBP14.96□□□□□ -0.01
USP40-206ENST00000443711 NPHS2Q9NP85 383 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 LHX9Q9NQ69 397 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 THSD1Q9NS62 852 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 SIRT5Q9NXA8 310 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ADAM21Q9UKJ8 722 aa14.96□□□□□ -0.01
USP40-206ENST00000443711 ARHGAP10A1A4S6 786 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 BRINP1O60477 761 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 DIAPH2O60879 1101 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 ONECUT2O95948 504 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 KLK1P06870 262 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 FBLP22087 321 aaKnown RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 OR1D4P47884 311 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 AQP5P55064 265 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 MAP7Q14244 749 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 SMU1Q2TAY7 513 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 NKAIN1Q4KMZ8 207 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 C6orf136Q5SQH8 315 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 CCNYL2Q5T2Q4 361 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 VWA5B1Q5TIE3 1220 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 ZNF385CQ66K41 422 aaPredicted RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 GALNT18Q6P9A2 607 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 MAVSQ7Z434 540 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 ZCCHC7Q8N3Z6 543 aaKnown RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 DTWD1Q8N5C7 304 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 METTL27Q8N6F8 245 aaPredicted RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 MR1Q95460 341 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 ZNF578Q96N58 590 aaPredicted RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 SORBS1Q9BX66 1292 aaKnown RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 ZNF717Q9BY31 904 aaPredicted RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 NSRP1Q9H0G5 558 aaKnown RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 WDR55Q9H6Y2 383 aaPredicted RBP14.95□□□□□ -0.02
USP40-206ENST00000443711 AKTIPQ9H8T0 292 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 PADI1Q9ULC6 663 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 TMED5Q9Y3A6 229 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 MAU2Q9Y6X3 613 aa14.95□□□□□ -0.02
USP40-206ENST00000443711 GOLGA8QA0A0J9YX86 632 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 GOLGA8OA6NCC3 632 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 ZNF860A6NHJ4 632 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 GOLGA8NF8WBI6 632 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 STMND1H3BQB6 276 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 CHST10O43529 356 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 RDH16O75452 317 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 EEDO75530 441 aaKnown RBP14.94□□□□□ -0.02
USP40-206ENST00000443711 LBPP18428 481 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 CERS1P27544 350 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 MAPK1P28482 360 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 EPHA3P29320 983 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 TIA1P31483 386 aaKnown RBP eCLIP14.94□□□□□ -0.02
USP40-206ENST00000443711 IDH3AP50213 366 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 SEC24CP53992 1094 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 MAD2L1Q13257 205 aaPredicted RBP14.94□□□□□ -0.02
USP40-206ENST00000443711 SLAMF1Q13291 335 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 RUNX2Q13950 521 aa14.94□□□□□ -0.02
USP40-206ENST00000443711 DSG2Q14126 1118 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms