RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 SLC9A3P48764 834 aa16.57■□□□□ 0.24
PTPRF-209ENST00000438120 CD83Q01151 205 aa16.57■□□□□ 0.24
PTPRF-209ENST00000438120 PAMR1Q6UXH9 720 aa16.57■□□□□ 0.24
PTPRF-209ENST00000438120 OR4K14Q8NGD5 310 aa16.57■□□□□ 0.24
PTPRF-209ENST00000438120 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-209ENST00000438120 RPF2Q9H7B2 306 aaKnown RBP16.57■□□□□ 0.24
PTPRF-209ENST00000438120 GPR89AB7ZAQ6 455 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 J3QRK9 145 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 L7N2F9 121 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 ENTPD6O75354 484 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 C8BP07358 591 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 GPR89BP0CG08 455 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 VAMP2P63027 116 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RAB6CQ53S08 254 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PLEKHS1Q5SXH7 462 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 ERMP1Q7Z2K6 904 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 FBXL8Q96CD0 374 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 NXPE2Q96DL1 559 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RAD9AQ99638 391 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 GPR174Q9BXC1 333 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RAB6CQ9H0N0 254 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 VAMP1P23763 118 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 ACRV1P26436 265 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 GABRA3P34903 492 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 GRK5P34947 590 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 S100A10P60903 97 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RPL26P61254 145 aaKnown RBP16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RPL6Q02878 288 aaKnown RBP16.56■□□□□ 0.24
PTPRF-209ENST00000438120 CCINQ13939 588 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 SFT2D3Q587I9 215 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PSAPL1Q6NUJ1 521 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 WDTC1Q8N5D0 677 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF611Q8N823 705 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 BADQ92934 168 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 GLYATL1Q969I3 302 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PTCHD1Q96NR3 888 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 TGM7Q96PF1 710 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 LAMP5Q9UJQ1 280 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 BAIAP2Q9UQB8 552 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 MEMO1Q9Y316 297 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 SCO2O43819 266 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 CD1DP15813 335 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 C6orf136Q5SQH8 315 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 REEP3Q6NUK4 255 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 MFSD2AQ8NA29 543 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 FANK1Q8TC84 345 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 BEX2Q9BXY8 128 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 BEX1Q9HBH7 125 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PRTFDC1Q9NRG1 225 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PIK3C2AO00443 1686 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 ZNF16P17020 682 aaPredicted RBP16.56■□□□□ 0.24
PTPRF-209ENST00000438120 PER3P56645 1201 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RHDQ02161 417 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 SNTA1Q13424 505 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 IRF5Q13568 498 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 THOC7Q6I9Y2 204 aaKnown RBP16.56■□□□□ 0.24
PTPRF-209ENST00000438120 OR2M4Q96R27 311 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 SLCO3A1Q9UIG8 710 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RAB36O95755 333 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 DEFB134Q4QY38 66 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM17Q86X19 198 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 WACQ9BTA9 647 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 MEAF6Q9HAF1 191 aa16.56■□□□□ 0.24
PTPRF-209ENST00000438120 RFPL1O75677 317 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 HTR1AP08908 422 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 EDNRBP24530 442 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ACTL8Q9H568 366 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 RNF186Q9NXI6 227 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 UBR1Q8IWV7 1749 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 CDC40O60508 579 aaKnown RBP eCLIP16.55■□□□□ 0.248e-7■■□□□ 14.2
PTPRF-209ENST00000438120 GPR32O75388 356 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ELK4P28324 431 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 SHMT2P34897 504 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 RPS21P63220 83 aaKnown RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 POU6F2P78424 691 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ANKDD1AQ495B1 522 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 NANOGP8Q6NSW7 305 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 TSACCQ96A04 125 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 IMP4Q96G21 291 aaKnown RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM80Q96HE8 168 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 SOX17Q9H6I2 414 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 NANOGQ9H9S0 305 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 IGLON5A6NGN9 336 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 C2orf74A8MZ97 194 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 RNGTTO60942 597 aaKnown RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 KDM4BO94953 1096 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ACADVLP49748 655 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 NR0B1P51843 470 aaKnown RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 ZBED5Q49AG3 693 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 CCDC80Q76M96 950 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 OR51G2Q8NGK0 314 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 MS4A12Q9NXJ0 267 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 C13orf42A0A1B0GVH6 325 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 MAD2L1BPQ15013 274 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 PAQR7Q86WK9 346 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 OR6N2Q8NGY6 317 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 TMEM125Q96AQ2 219 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 CMKLR1Q99788 373 aa16.55■□□□□ 0.24
PTPRF-209ENST00000438120 MARCH4Q9P2E8 410 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-209ENST00000438120 NCDNQ9UBB6 729 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms