RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	TRIM77	I1YAP6	450 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	RTCA	O00442	366 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	IPO8	O15397	1037 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	MTRF1	O75570	445 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	PDGFRA	P16234	1089 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	YWHAH	Q04917	246 aa	Predicted RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	PTK6	Q13882	451 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	HYAL4	Q2M3T9	481 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	CCDC92	Q53HC0	331 aa	Predicted RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	LBH	Q53QV2	105 aa	Predicted RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	ZRANB3	Q5FWF4	1079 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	NHSL2	Q5HYW2	709 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	ATP1A1-AS1	Q5TC04	95 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	PET117	Q6UWS5	81 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	RBPMS2	Q6ZRY4	209 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	ZBTB49	Q6ZSB9	765 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	TMUB2	Q71RG4	321 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	CPEB2	Q7Z5Q1	589 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	SYCP3	Q8IZU3	236 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	SIX6OS1	Q8N1H7	587 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	CCDC185	Q8N715	623 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	TCEANC	Q8N8B7	351 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	RASGEF1A	Q8N9B8	481 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	GDAP1	Q8TB36	358 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	SETD6	Q8TBK2	473 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	KRT35	Q92764	455 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	MR1	Q95460	341 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	NUS1	Q96E22	293 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	FEV	Q99581	238 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	KATNB1	Q9BVA0	655 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	DBNDD1	Q9H9R9	158 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	RAVER2	Q9HCJ3	691 aa	Known RBP	2.57	□□□□□ -2
PTPN4-205	ENST00000433888	GSN-AS1	Q9NRJ2	163 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	MTRR	Q9UBK8	725 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	SLC6A5	Q9Y345	797 aa		2.57	□□□□□ -2
PTPN4-205	ENST00000433888	IQCM	A0A1B0GVH7	501 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ST8SIA3	O43173	380 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	SNX3	O60493	162 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	FMO6P	O60774	539 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ACSL3	O95573	720 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	SEMA4F	O95754	770 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	MT-ND1	P03886	318 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	SAG	P10523	405 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	EPCAM	P16422	314 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ERCC2	P18074	760 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CD22	P20273	847 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	GPR183	P32249	361 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	HSPA4	P34932	840 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CAPZA1	P52907	286 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	YBEY	P58557	167 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	UBXN1	Q04323	297 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ACSM1	Q08AH1	577 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	RCN2	Q14257	317 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CDC37	Q16543	378 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CRY2	Q49AN0	593 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	C2orf83	Q53S99	150 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CST9LP1	Q5W188	147 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	CCDC186	Q7Z3E2	898 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	SERINC5	Q86VE9	423 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ZSCAN30	Q86W11	494 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	TMCO5A	Q8N6Q1	288 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	GBP7	Q8N8V2	638 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	IQUB	Q8NA54	791 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	RPLP0P6	Q8NHW5	317 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	DEPDC1B	Q8WUY9	529 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	NABP1	Q96AH0	204 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ZNF285	Q96NJ3	590 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ACAT2	Q9BWD1	397 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	RBM24	Q9BX46	236 aa	Known RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	MRPL1	Q9BYD6	325 aa	Known RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	PRRG4	Q9BZD6	226 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	LRRCC1	Q9C099	1032 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	C2orf40	Q9H1Z8	148 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	COPS7B	Q9H9Q2	264 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	DNAJC4	Q9NNZ3	241 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	AKAP7	Q9P0M2	348 aa	Predicted RBP	2.56	□□□□□ -2
PTPN4-205	ENST00000433888	LIPG	Q9Y5X9	500 aa		2.56	□□□□□ -2
PTPN4-205	ENST00000433888	ZNF749	O43361	778 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	NME6	O75414	186 aa	Predicted RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	RECQL5	O94762	991 aa	Predicted RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	CD59	P13987	128 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ANPEP	P15144	967 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	LBP	P18428	481 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ACHE	P22303	614 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	ATP5D	P30049	168 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	RAB28	P51157	221 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	HNRNPA3	P51991	378 aa	Known RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	RIDA	P52758	137 aa	Known RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	NME5	P56597	212 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	IL16	Q14005	1332 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	MLF2	Q15773	248 aa	Predicted RBP	2.55	□□□□□ -2
PTPN4-205	ENST00000433888	VWC2	Q2TAL6	325 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	CYB5D1	Q6P9G0	228 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	CTR9	Q6PD62	1173 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	PAMR1	Q6UXH9	720 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	KLHL7	Q8IXQ5	586 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	SFRP1	Q8N474	314 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	OR9Q2	Q8NGE9	314 aa		2.55	□□□□□ -2
PTPN4-205	ENST00000433888	SEPT1	Q8WYJ6	367 aa		2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms