RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RTP4Q96DX8 246 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 MAELQ96JY0 434 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SPATA13Q96N96 652 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 APOOQ9BUR5 198 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GBA3Q9H227 469 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRABDQ9H4I3 376 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RMI1Q9H9A7 625 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CHODLQ9H9P2 273 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 IL21RQ9HBE5 538 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 MBNL1Q9NR56 388 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TRMT1Q9NXH9 659 aaKnown RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 PKD2L2Q9NZM6 624 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 HACD3Q9P035 362 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 RSPH14Q9UHP6 348 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TTC7AQ9ULT0 858 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CA5BQ9Y2D0 317 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 DNAJC16Q9Y2G8 782 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 CSNK1G3Q9Y6M4 447 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 EP300Q09472 2414 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 ZFHX2Q9C0A1 2572 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-208ENST00000423463 GON4LQ3T8J9 2241 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 SPAG17Q6Q759 2223 aa2.43□□□□□ -2.02
VPS13A-208ENST00000423463 TCRBV7S3A2A0A539 114 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NEMP2A6NFY4 417 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NPIPB15A6NHN6 443 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ERI2A8K979 691 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 A8MX80 341 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CACNB4O00305 520 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LIASO43766 372 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 KCNK5O95279 499 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CLDN7O95471 211 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 MT-CYBP00156 380 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FGGP02679 453 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CSF2P04141 144 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FGF1P05230 155 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ALPIP09923 528 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 GM2AP17900 193 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TCP1P17987 556 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TNFRSF1BP20333 461 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LHCGRP22888 699 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CNTFP26441 200 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 EPHA8P29322 1005 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ACTN2P35609 894 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FDFT1P37268 417 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 BLKP51451 505 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TMPRSS3P57727 454 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 KIAA1024LP59773 190 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SEMG2Q02383 582 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PPARDQ03181 441 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 HNRNPA0Q13151 305 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PDE1CQ14123 709 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NFATC4Q14934 902 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SHBQ15464 509 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CDKN3Q16667 212 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ZDHHC20Q5W0Z9 365 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LRRC66Q68CR7 880 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 AWAT2Q6E213 333 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PNCKQ6P2M8 343 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 MACC1Q6ZN28 852 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 COLCA1Q6ZS62 124 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 DGLUCYQ7Z3D6 616 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PTAR1Q7Z6K3 402 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 GLRX5Q86SX6 157 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TSPAN33Q86UF1 283 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PARGQ86W56 976 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SLC35F6Q8N357 371 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 RASGEF1CQ8N431 466 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ESX1Q8N693 406 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SAP25Q8TEE9 199 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 AP2M1Q96CW1 435 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 MSI2Q96DH6 328 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NUS1Q96E22 293 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 DTD2Q96FN9 168 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 OXNAD1Q96HP4 312 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 MPP4Q96JB8 637 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NAP1L3Q99457 506 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 C19orf43Q9BQ61 176 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FRMD8Q9BZ67 464 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 GPR63Q9BZJ6 419 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ABCG8Q9H221 673 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 C10orf88Q9H8K7 445 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF304Q9HCX3 659 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 FZD3Q9NPG1 666 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PAPOLBQ9NRJ5 636 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PHPT1Q9NRX4 125 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NFKBIL1Q9UBC1 381 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 SPASTQ9UBP0 616 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 ZNF148Q9UQR1 794 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LAMP3Q9UQV4 416 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 R3HDM2Q9Y2K5 976 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 NUMA1Q14980 2115 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 XIRP2A4UGR9 3374 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 C1orf232A0A0U1RR37 186 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 H3BNX3 289 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TNFSF14O43557 240 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 CNOT3O75175 753 aaKnown RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 LDOC1O95751 146 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-208ENST00000423463 AGTP01019 485 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 TNFP01375 233 aa2.42□□□□□ -2.02
VPS13A-208ENST00000423463 PCCBP05166 539 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms