RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 EEDO75530 441 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 KRT16P08779 473 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 TPP2P29144 1249 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 NBL1P41271 181 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 TAS2R50P59544 299 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 SRSF11Q05519 484 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 C2orf80Q0P641 193 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 HYAL2Q12891 473 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 SQSTM1Q13501 440 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 SLC9A5Q14940 896 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 PGS1Q32NB8 556 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 FAM174BQ3ZCQ3 159 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 WASHC2DQ5SRD0 308 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 C16orf89Q6UX73 402 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 FUNDC1Q8IVP5 155 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 NAXDQ8IW45 347 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 ARHGAP24Q8N264 748 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 DNAJC22Q8N4W6 341 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 TTC29Q8NA56 475 aaPredicted RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 OR4D9Q8NGE8 314 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 MCUR1Q96AQ8 359 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 SLC45A3Q96JT2 553 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 BTBD10Q9BSF8 475 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 FAIM2Q9BWQ8 316 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 LRMDAQ9H2I8 198 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 RMND5AQ9H871 391 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 DDX31Q9H8H2 851 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 MIEF1Q9NQG6 463 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 ATAD3AQ9NVI7 634 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 TMEM9Q9P0T7 183 aa16.29■□□□□ 0.2
CCDC28B-202ENST00000421922 A0A1W2PP18 115 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SCAMP2O15127 329 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 B3GALT2O43825 422 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 FOXD2O60548 495 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 IL3P08700 152 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 CAPN3P20807 821 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 HIST1H1TP22492 207 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ATP5A1P25705 553 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 IL12AP29459 219 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 KIR3DL1P43629 444 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 MTTPP55157 894 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 TRA2BP62995 288 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 BTN3A2P78410 334 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 CFHR1Q03591 330 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SPIDRQ14159 915 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 HEPACAMQ14CZ8 416 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 COQ5Q5HYK3 327 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 RINLQ6ZS11 566 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 OR8K5Q8NH50 307 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 UTP15Q8TED0 518 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 VPS33AQ96AX1 596 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 TESCQ96BS2 214 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 EGLN2Q96KS0 407 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 NPAS2Q99743 824 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ACTL8Q9H568 366 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SYNPO2LQ9H987 977 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 GID8Q9NWU2 228 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 LYARQ9NX58 379 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SH3BP5O60239 455 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 PGRP06401 933 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 GP1BAP07359 652 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ALOX12P18054 663 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 CERS1P27544 350 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ALDH9A1P49189 494 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 KLC1Q07866 573 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SPANXN4Q5MJ08 99 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 CPTPQ5TA50 214 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 NIPAL1Q6NVV3 410 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 DBX2Q6ZNG2 339 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 UBE3DQ7Z6J8 389 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 GPR180Q86V85 440 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 GPR135Q8IZ08 494 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ZCCHC7Q8N3Z6 543 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 EFCAB3Q8N7B9 438 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ACOT4Q8N9L9 421 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 RBM15BQ8NDT2 890 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 PPCDCQ96CD2 204 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 TEFMQ96QE5 360 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 RAB3IPQ96QF0 476 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 OR52E6Q96RD3 313 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SERINC2Q96SA4 455 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ZNF717Q9BY31 904 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 C1orf21Q9H246 121 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ZNF768Q9H5H4 540 aaKnown RBP16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 REEP4Q9H6H4 257 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 ANKHQ9HCJ1 492 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 STARD5Q9NSY2 213 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SH3BP4Q9P0V3 963 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 SPACA6W5XKT8 324 aa16.28■□□□□ 0.2
CCDC28B-202ENST00000421922 A0A0A6YYD5 115 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 A0A1W2PQM1 296 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 TMEM150CB9EJG8 249 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 CDX4O14627 284 aaPredicted RBP16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 FAM58BPP0C7Q3 252 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 NELFEP18615 380 aaKnown RBP16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 ACP1P24666 158 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 DGKQP52824 942 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 C21orf58P58505 322 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 SLAMF1Q13291 335 aa16.27■□□□□ 0.19
CCDC28B-202ENST00000421922 NFYCQ13952 458 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 292.9 ms