RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ABCG4Q9H172 646 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 SPASTQ9UBP0 616 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 REV1Q9UBZ9 1251 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 ATP6V1HQ9UI12 483 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 TBC1D24Q9ULP9 559 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 LSM2Q9Y333 95 aaKnown RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 IFT52Q9Y366 437 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 RANBP2P49792 3224 aaKnown RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 A0A1W2PRU2 124 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 RNASET2O00584 256 aaKnown RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 CTDSP2O14595 271 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 PRRG1O14668 218 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 TP53P04637 393 aaPredicted RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 FURINP09958 794 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 NPPBP16860 134 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 CHMP24386 653 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 PIK3CBP42338 1070 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 NR4A2P43354 598 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 AP1S2P56377 157 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 TLE2Q04725 743 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 MESP2Q0VG99 397 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 SREBF2Q12772 1141 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 CCDC92Q53HC0 331 aaPredicted RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 NEK10Q6ZWH5 1172 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 USP45Q70EL2 814 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 CCDC80Q76M96 950 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 CCNB1IP1Q9NPC3 277 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 HCFC1R1Q9NWW0 138 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 MS4A12Q9NXJ0 267 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 ITM2BQ9Y287 266 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 TRANK1O15050 2925 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 LRRTM2O43300 516 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 INHAP05111 366 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HIST1H2AGP0C0S8 130 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 TIMP2P16035 220 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HIST1H2ADP20671 130 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 TIA1P31483 386 aaKnown RBP eCLIP9.44□□□□□ -0.9
SS18-203ENST00000415083 GANABQ14697 944 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 PTGES3Q15185 160 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 POM121L1PQ3SYA9 428 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 MPPE1Q53F39 396 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ZMAT1Q5H9K5 638 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 TECPR1Q7Z6L1 1165 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 LGI4Q8N135 537 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 CLIP4Q8N3C7 705 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 GPR32P1Q8NGA4 272 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 SPPL2AQ8TCT8 520 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ZNF480Q8WV37 535 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ZNF689Q96CS4 500 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 TXNDC15Q96J42 360 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HIST1H2AHQ96KK5 128 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HIST1H2AJQ99878 128 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 H2AFJQ9BTM1 129 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 MMP27Q9H306 513 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 SP140LQ9H930 580 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 MARCH7Q9H992 704 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 RMI1Q9H9A7 625 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 BRF2Q9HAW0 419 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 CLEC2DQ9UHP7 191 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 UGT2A1Q9Y4X1 527 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 K7ESM1 405 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HOXB6P17509 224 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 CYP2A7P20853 494 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 MAPK8P45983 427 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 HMGA2P52926 109 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 SNRPD1P62314 119 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 ACSM2AQ08AH3 577 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 COL9A2Q14055 689 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 ARMCX4Q5H9R4 360 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 RPS26P11Q5JNZ5 115 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 TPRG1LQ5T0D9 272 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 NXNL2Q5VZ03 156 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ACSM2BQ68CK6 577 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 COMMD6Q7Z4G1 85 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 CCDC190Q86UF4 302 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 RNF130Q86XS8 419 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 PLD3Q8IV08 490 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ADGRF3Q8IZF5 1079 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 IL17RDQ8NFM7 739 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 VN1R2Q8NFZ6 395 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 GTPBP3Q969Y2 492 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 OPALINQ96PE5 141 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 WRAP53Q9BUR4 548 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 ZNF717Q9BY31 904 aaPredicted RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 LINC00597Q9H2U6 94 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 SLC25A19Q9HC21 320 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 FZD3Q9NPG1 666 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 THSD1Q9NS62 852 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 LOC100506127A0A0U1RQW1 187 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 PRAMEF27A3QJZ7 478 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ZAR1LA6NP61 321 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ALOX5P09917 674 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 ETV6P41212 452 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 CRATP43155 626 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 IDH2P48735 452 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 ARHGDIAP52565 204 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 KIAA1841Q6NSI8 718 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 RBM45Q8IUH3 476 aaKnown RBP9.44□□□□□ -0.9
SS18-203ENST00000415083 STARD8Q92502 1023 aa9.44□□□□□ -0.9
SS18-203ENST00000415083 CHCHD6Q9BRQ6 235 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms