RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SCRN2Q96FV2 425 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 ALS2CR12Q96Q35 445 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 NR1H4Q96RI1 486 aaPredicted RBP6.16□□□□□ -1.42
USP40-202ENST00000409945 CENPOQ9BU64 300 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 ABCG4Q9H172 646 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 WDR26Q9H7D7 661 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 LZTFL1Q9NQ48 299 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 ARGLU1Q9NWB6 273 aaPredicted RBP6.16□□□□□ -1.42
USP40-202ENST00000409945 NLGN3Q9NZ94 848 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 PKD2L2Q9NZM6 624 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 PLEKHB1Q9UF11 243 aaPredicted RBP6.16□□□□□ -1.42
USP40-202ENST00000409945 APOBEC3BQ9UH17 382 aaKnown RBP6.16□□□□□ -1.42
USP40-202ENST00000409945 ICKQ9UPZ9 632 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 PCDHGA1Q9Y5H4 931 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 SHROOM3Q8TF72 1996 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 SPTBN2O15020 2390 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 A6NCN8 305 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 TMEM8BA6NDV4 472 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 C10orf142B7Z368 130 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 TEX22C9J3V5 150 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 H7C0C1 242 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 TRAFD1O14545 582 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 AQP9O43315 295 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 AKAP8O43823 692 aaKnown RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 CEP104O60308 925 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 SDC3O75056 442 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 RECQL5O94762 991 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 TNFP01375 233 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CKMT2P17540 419 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 DGKAP23743 735 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CTNNA1P35221 906 aaKnown RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 CDKN2BP42772 138 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 PAFAH1B1P43034 410 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 RGRP47804 291 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 ATP5OP48047 213 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 PFN3P60673 137 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 IFI35P80217 286 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 CFHR1Q03591 330 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 PRPSAP1Q14558 356 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 IRF4Q15306 451 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 ITPRIPL1Q6GPH6 555 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 ENPP7Q6UWV6 458 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 MFSD7Q6UXD7 560 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CDKL3Q8IVW4 592 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 PQLC3Q8N755 202 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 METTL6Q8TCB7 284 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 LMX1AQ8TE12 382 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 ADAMTS14Q8WXS8 1223 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 DDB2Q92466 427 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CENPTQ96BT3 561 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 BMFQ96LC9 184 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 C7orf26Q96N11 449 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CAMK1GQ96NX5 476 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 PIMREGQ9BSJ6 248 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 APOOQ9BUR5 198 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 MLPHQ9BV36 600 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 AAMDCQ9H7C9 122 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 PCDH9Q9HC56 1237 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 KLHL8Q9P2G9 620 aaPredicted RBP6.15□□□□□ -1.42
USP40-202ENST00000409945 MOSPD1Q9UJG1 213 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CA5BQ9Y2D0 317 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 HYOU1Q9Y4L1 999 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 NEUROG3Q9Y4Z2 214 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 SLCO1B1Q9Y6L6 691 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 KNL1Q8NG31 2342 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 CABIN1Q9Y6J0 2220 aa6.15□□□□□ -1.42
USP40-202ENST00000409945 A0A087X0M5 115 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 A0A0J9YYE9 177 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 A0A1B0GX30 115 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 RGSL1A5PLK6 1076 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 LINC01548A6NM66 108 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 APOC4-APOC2K7ER74 178 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 KCNK1O00180 336 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 SCAMP1O15126 338 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 TRBC1P01850 177 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 APOC2P02655 101 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 HOXC4P09017 264 aaPredicted RBP6.15□□□□□ -1.43
USP40-202ENST00000409945 UBL4AP11441 157 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 ACTN2P35609 894 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 CD86P42081 329 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 GDF5P43026 501 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 GPR1P46091 355 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 POLD2P49005 469 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 TRAF2Q12933 501 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 XRCC4Q13426 336 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 NFATC4Q14934 902 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 SYTL3Q4VX76 610 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 TEX44Q53QW1 395 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 SEL1L2Q5TEA6 688 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 ASPHD1Q5U4P2 390 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 RAET1GQ6H3X3 334 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 RD3Q7Z3Z2 195 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 CEP112Q8N8E3 955 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 LPCAT1Q8NF37 534 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 OR6C4Q8NGE1 309 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 OR56A4Q8NGH8 313 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 OR4C6Q8NH72 309 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 NAT6Q93015 286 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 AGAP3Q96P47 875 aa6.15□□□□□ -1.43
USP40-202ENST00000409945 LGMNQ99538 433 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms