RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RBM44Q6ZP01 1051 aaKnown RBP12.82□□□□□ -0.36
LIMS1-204ENST00000409441 PTRH1Q86Y79 214 aaKnown RBP12.82□□□□□ -0.36
LIMS1-204ENST00000409441 GLB1L3Q8NCI6 653 aaPredicted RBP12.82□□□□□ -0.36
LIMS1-204ENST00000409441 MIEF2Q96C03 454 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 PRAP1Q96NZ9 151 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 ZBTB18Q99592 522 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 DPH7Q9BTV6 452 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 GPRC5BQ9NZH0 403 aa12.82□□□□□ -0.36
LIMS1-204ENST00000409441 IGKV1-8A0A0C4DH67 115 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 A0A0J9YY10 115 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SERTM1A2A2V5 107 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 TLCD2A6NGC4 264 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 MANBAO00462 879 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 ANKRD28O15084 1053 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 TOX3O15405 576 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 PRAMEF10O60809 474 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 G6PDP11413 515 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CDH1P12830 882 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 ST6GAL1P15907 406 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 MAGP20916 626 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 IL12AP29459 219 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 ZFP36L1Q07352 338 aaKnown RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CAPRIN1Q14444 709 aaKnown RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 IMPG1Q17R60 797 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 TIGD2Q4W5G0 525 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 PAGE3Q5JUK9 113 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CATSPEREQ5SY80 951 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 PHF19Q5T6S3 580 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CDCP2Q5VXM1 449 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 FIGLAQ6QHK4 219 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 NXPE4Q6UWF7 544 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 ARHGAP22Q7Z5H3 698 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SLITRK4Q8IW52 837 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 FAM9CQ8IZT9 166 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CARFQ8N187 725 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 MARVELD2Q8N4S9 558 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SLC5A11Q8WWX8 675 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 VPS33AQ96AX1 596 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SLCO4A1Q96BD0 722 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 TRAPPC9Q96Q05 1148 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SLC6A20Q9NP91 592 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 TMEM184CQ9NVA4 438 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 CUEDC1Q9NWM3 386 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 DLL3Q9NYJ7 618 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SEMA5BQ9P283 1151 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF490Q9ULM2 529 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 SNX7Q9UNH6 387 aa12.81□□□□□ -0.36
LIMS1-204ENST00000409441 POLR3HQ9Y535 204 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-204ENST00000409441 C9JVG2 144 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 E7EQ34 232 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CLGNO14967 610 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 HNRNPRO43390 633 aaKnown RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ZBTB11O95625 1053 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 MT-CO3P00414 261 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 GPIP06744 558 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 C1GALT1C1LP0DN25 315 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ATP6V1B2P21281 511 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PRPH2P23942 346 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 HRH2P25021 359 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 VARSP26640 1264 aaKnown RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 GSK3BP49841 420 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 SEPHS1P49903 392 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CCR8P51685 355 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CLDN6P56747 220 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 FOLH1Q04609 750 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ZNF33BQ06732 778 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 FXNQ16595 210 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 FCRL6Q6DN72 434 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CYP2R1Q6VVX0 501 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 SLCO4C1Q6ZQN7 724 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PRSS42Q7Z5A4 293 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 B3GNT8Q7Z7M8 397 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 L3MBTL4Q8NA19 623 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 RCBTB1Q8NDN9 531 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ABHD11Q8NFV4 315 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CCDC74BQ96LY2 380 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 TMEM74Q96NL1 305 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ALG2Q9H553 416 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ACTL8Q9H568 366 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 LRTM1Q9HBL6 345 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CCM2LQ9NUG4 571 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 SNX6Q9UNH7 406 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 RNF11Q9Y3C5 154 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 KLK4Q9Y5K2 254 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 SNX13Q9Y5W8 968 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 DMXL1Q9Y485 3027 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 DPPA5A6NC42 116 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 NPIPB8E9PQR5 432 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 PRAMEF4O60810 478 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 UBTFL6P0CB48 400 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 UMPSP11172 480 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 IL10P22301 178 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 HTR1EP28566 365 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 ARL4DP49703 201 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 RPL38P63173 70 aaKnown RBP12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CSNK1G2P78368 415 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 HSD11B2P80365 405 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 IRF8Q02556 426 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 LIPEQ05469 1076 aa12.8□□□□□ -0.36
LIMS1-204ENST00000409441 CHIT1Q13231 466 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms