RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 NKX2-1P43699 371 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 LINC00205P59089 165 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 PPP1R8Q12972 351 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 GAMTQ14353 236 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 HERC3Q15034 1050 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 PTPN14Q15678 1187 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 CCDC6Q16204 474 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZNF530Q6P9A1 599 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 SPSB3Q6PJ21 355 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 ARMC9Q7Z3E5 817 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 POC1AQ8NBT0 407 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 OR4C15Q8NGM1 316 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 KIAA1524Q8TCG1 905 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 NUDCD2Q8WVJ2 157 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 CD101Q93033 1021 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 TMEM143Q96AN5 459 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZNF560Q96MR9 790 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 NDNQ99608 321 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 PKP2Q99959 881 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 DDX50Q9BQ39 737 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 ALKBH7Q9BT30 221 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 LRRC2Q9BYS8 371 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 KRT23Q9C075 422 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 DDX47Q9H0S4 455 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 SYTL2Q9HCH5 934 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 MRPL17Q9NRX2 175 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 PHPT1Q9NRX4 125 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 INTS10Q9NVR2 710 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 FETUBQ9UGM5 382 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 KCNK6Q9Y257 313 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 STRAPQ9Y3F4 350 aaKnown RBP4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 TEX264Q9Y6I9 313 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 R4GN57 208 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 ITSN1Q15811 1721 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 NALCNQ8IZF0 1738 aa4.31□□□□□ -1.72
HMGB3P18-201ENST00000406327 C1orf167Q5SNV9 1468 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ATP10DQ9P241 1426 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PIK3C2AO00443 1686 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ADAMTSL3P82987 1691 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 IGLV9-49A0A0B4J1Y8 123 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ANKDD1BA6NHY2 528 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 E5RGE8 158 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 TXNL1O43396 289 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 SSX5O60225 188 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ATP6V1G1O75348 118 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 CDK2AP2O75956 126 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 MMP10P09238 476 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 SNHG28P0DPA3 235 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 FGF3P11487 239 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 F3P13726 295 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 CD59P13987 128 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 AREGP15514 252 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 AMD1P17707 334 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ASMTP46597 345 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NR0B1P51843 470 aaKnown RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 GAS1P54826 345 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 B3GALT5-AS1P59052 145 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 GALK2Q01415 458 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 SGCGQ13326 291 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 TRIM29Q14134 588 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PDK1Q15118 436 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 CCDC40Q4G0X9 1142 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 TECRLQ5HYJ1 363 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NEK5Q6P3R8 708 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ASPGQ86U10 573 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 THEM5Q8N1Q8 247 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 KDM8Q8N371 416 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 MARVELD2Q8N4S9 558 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 KLHDC1Q8N7A1 406 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NIPA2Q8N8Q9 360 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 GBP7Q8N8V2 638 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZNF383Q8NA42 475 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 CLEC1AQ8NC01 280 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 RNF149Q8NC42 400 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 SLC24A4Q8NFF2 622 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NEK11Q8NG66 645 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 OR7A2PQ8NGA2 310 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PIK3R3Q92569 461 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PRCCQ92733 491 aaPredicted RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 GGHQ92820 318 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 LMLNQ96KR4 655 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZNF354BQ96LW1 612 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 FAM111AQ96PZ2 611 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 KCNK16Q96T55 309 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PRMT1Q99873 361 aaKnown RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 PSD2Q9BQI7 771 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 SLC39A8Q9C0K1 460 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 BICC1Q9H694 974 aaKnown RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZDHHC6Q9H6R6 413 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 RAVER2Q9HCJ3 691 aaKnown RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 ZCCHC3Q9NUD5 404 aaKnown RBP4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 OR6C2Q9NZP2 312 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 TAAR2Q9P1P5 351 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 TEKT2Q9UIF3 430 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NSG2Q9Y328 171 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 COLEC10Q9Y6Z7 277 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NFAT5O94916 1531 aa4.3□□□□□ -1.72
HMGB3P18-201ENST00000406327 NCOA3Q9Y6Q9 1424 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms