RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RNH1P13489 461 aaKnown RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 HOXB6P17509 224 aaKnown RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 C1DQ13901 141 aaKnown RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 RFX4Q33E94 735 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 METTL2BQ6P1Q9 378 aaKnown RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 BLOC1S3Q6QNY0 202 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 HIPK1Q86Z02 1210 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 SFTPA1Q8IWL2 248 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 EDAQ92838 391 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 NTMT1Q9BV86 223 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 C1orf21Q9H246 121 aa8.72□□□□□ -1.01
LIG4-202ENST00000405925 TDRD15B5MCY1 1934 aaKnown RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 EP300Q09472 2414 aaPredicted RBP8.72□□□□□ -1.01
LIG4-202ENST00000405925 CHURC1-FNTBB4DL54 471 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ADAMDEC1O15204 470 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 AP1G1O43747 822 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 C9P02748 559 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ALPPP05187 535 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 RAP2AP10114 183 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 GLULP15104 373 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 CKMT2P17540 419 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 AFF3P51826 1226 aaKnown RBP8.71□□□□□ -1.01
LIG4-202ENST00000405925 PSMD4P55036 377 aaKnown RBP8.71□□□□□ -1.01
LIG4-202ENST00000405925 CDKL1Q00532 357 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 PRDX1Q06830 199 aaKnown RBP8.71□□□□□ -1.01
LIG4-202ENST00000405925 GRIK2Q13002 908 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 C1orf189Q5VU69 101 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ETFBKMTQ8IXQ9 262 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ATP6V1C2Q8NEY4 427 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 OR5K2Q8NHB8 316 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 NFKBIDQ8NI38 313 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 SLC38A4Q969I6 547 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ZNF419Q96HQ0 510 aaPredicted RBP8.71□□□□□ -1.01
LIG4-202ENST00000405925 LRRC3BQ96PB8 259 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ACPTQ9BZG2 426 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 PELI2Q9HAT8 420 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 SMOXQ9NWM0 555 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 ERVK-11Q9UQG0 969 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 SPTA1P02549 2419 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 AHCTF1Q8WYP5 2266 aa8.71□□□□□ -1.01
LIG4-202ENST00000405925 AQP9O43315 295 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 LAMP1P11279 417 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 POU2F1P14859 743 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 IL9P15248 144 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 IGFALSP35858 605 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 SHC2P98077 582 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 GRM7Q14831 915 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 NR1D2Q14995 579 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 NCF4Q15080 339 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CTC1Q2NKJ3 1217 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 DCST1Q5T197 706 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 PIP5KL1Q5T9C9 394 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CGB2Q6NT52 195 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ZC3H14Q6PJT7 736 aaKnown RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 CHMP1BQ7LBR1 199 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CLECL1Q8IZS7 167 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 SDR16C5Q8N3Y7 309 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 FRMD1Q8N878 549 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ARL10Q8N8L6 244 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 OR56A1Q8NGH5 318 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 RHBDD1Q8TEB9 315 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 MR1Q95460 341 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 BIRC7Q96CA5 298 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 GORASP1Q9BQQ3 440 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 EPHX3Q9H6B9 360 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 LTB4R2Q9NPC1 389 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 SCHIP1Q9P0W5 487 aaPredicted RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 LRIT1Q9P2V4 623 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ACSL6Q9UKU0 697 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CNOT1A5YKK6 2376 aaKnown RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 EPOPA6NHQ4 379 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 SLC9B1P1A6NJY1 282 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 TLR4O00206 839 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 PIM1P11309 404 aaPredicted RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 CAPN3P20807 821 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 IGFBP5P24593 272 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CD27P26842 260 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 FNTBP49356 437 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 RACK1P63244 317 aaKnown RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 OC90Q02509 493 aaPredicted RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 RUNX1T1Q06455 604 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 TRAP1Q12931 704 aaKnown RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 TRAF3Q13114 568 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 CAMK1Q14012 370 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ALG11Q2TAA5 492 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 DEPDC1Q5TB30 811 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 AGBL4Q5VU57 503 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 OR4C11Q6IEV9 310 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ZNF551Q7Z340 670 aaPredicted RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 ADCK1Q86TW2 530 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 FAM217AQ8IXS0 508 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ZNF740Q8NDX6 193 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 TEX47Q8TBZ9 253 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 KAT2AQ92830 837 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 ISL2Q96A47 359 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 MRGPRX3Q96LB0 322 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 COQ10AQ96MF6 247 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 SORBS1Q9BX66 1292 aaKnown RBP8.71□□□□□ -1.02
LIG4-202ENST00000405925 OSBPL11Q9BXB4 747 aa8.71□□□□□ -1.02
LIG4-202ENST00000405925 RPF2Q9H7B2 306 aaKnown RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms