RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CD47Q08722 323 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PRAMEF13Q5VWM6 474 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 CMASQ8NFW8 434 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 OR5T1Q8NG75 326 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 ELMOD3Q96FG2 381 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 MAGEH1Q9H213 219 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF510Q9Y2H8 683 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PCDHGB5Q9Y5G0 923 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PTPRJQ12913 1337 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 IRS2Q9Y4H2 1338 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 A0A0G2JMP0 313 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 HSD3B1P14060 373 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 MC2RQ01718 297 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 CDNFQ49AH0 187 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 OR4M2Q8NGB6 313 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 PCBD2Q9H0N5 130 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 PTPRMP28827 1452 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 LRP8Q14114 963 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 GPR135Q8IZ08 494 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 SMARCD2Q92925 531 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 GJD4Q96KN9 370 aaPredicted RBP11.46□□□□□ -0.58
SYNPO-202ENST00000394243 RNF121Q9H920 327 aa11.46□□□□□ -0.58
SYNPO-202ENST00000394243 A0A1W2PQL4 384 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 MANBAO00462 879 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GDF5P43026 501 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 MAGEA3P43357 314 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CEACAM7Q14002 265 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF678Q5SXM1 525 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ZSWIM9Q86XI8 627 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 RNF130Q86XS8 419 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 MCEMP1Q8IX19 187 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 FBXO15Q8NCQ5 510 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 KCNN1Q92952 543 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ARL11Q969Q4 196 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SECISBP2Q96T21 854 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NPLQ9BXD5 320 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF705GA8MUZ8 300 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 TFP02787 698 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GLP1RP43220 463 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 LSSP48449 732 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CRYBB1P53674 252 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 TRAM1Q15629 374 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SLC39A4Q6P5W5 647 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 TXNDC5Q8NBS9 432 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GTF2H4Q92759 462 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 JSRP1Q96MG2 331 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 HDHD5Q9BXW7 423 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 IGFLR1Q9H665 355 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 FAM120CQ9NX05 1096 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NLGN3Q9NZ94 848 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ANKMY1Q9P2S6 941 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 FZD1Q9UP38 647 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SMIM28A0A1B0GU29 152 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 UBFD1O14562 309 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SSTP61278 116 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 KCNJ8Q15842 424 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GRIK5Q16478 980 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CFAP77Q6ZQR2 320 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ZFP41Q8N8Y5 198 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 OR7G1Q8NGA0 311 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 OR8K5Q8NH50 307 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 HNRNPABQ99729 332 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CPQQ9Y646 472 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 WTIPA6NIX2 430 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GABRR2P28476 465 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 HTR1EP28566 365 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CD52P31358 61 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 DIO3P55073 304 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SIRPB2Q5JXA9 342 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NKAPLQ5M9Q1 402 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 BAIAP2L2Q6UXY1 529 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NPAS3Q8IXF0 933 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SAMD14Q8IZD0 417 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 PCED1BQ96HM7 432 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 SEC61A2Q9H9S3 476 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ZBTB20Q9HC78 741 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 MYNNQ9NPC7 610 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CNOT11Q9UKZ1 510 aaKnown RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 WDR45Q9Y484 360 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 OR6C65A6NJZ3 312 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 TSPAN15O95858 294 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 C6orf47O95873 294 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 GBAP04062 536 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 HOXD8P13378 290 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CSNK2A2P19784 350 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 RFC2P35250 354 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 PDX1P52945 283 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 DEFA6Q01524 100 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 CREB5Q02930 508 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NPRL3Q12980 569 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 PRAMEF19Q5SWL8 479 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ABHD15Q6UXT9 468 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 C16orf58Q96GQ5 468 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 NEUROD4Q9HD90 331 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 RNF11Q9Y3C5 154 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 PPP1R11O60927 126 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-202ENST00000394243 LATS1O95835 1130 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ASGR1P07306 291 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 ENPP2Q13822 863 aa11.45□□□□□ -0.58
SYNPO-202ENST00000394243 LRRC73Q5JTD7 316 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms