RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 EEFSECP57772 596 aaKnown RBP13.25□□□□□ -0.29
COL4A1-201ENST00000375820 TMIGD1Q6UXZ0 262 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 GALNT12Q8IXK2 581 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 WDR20Q8TBZ3 569 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 RDH12Q96NR8 316 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 EFCAB11Q9BUY7 163 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 RNF38Q9H0F5 515 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 SSU72Q9NP77 194 aaKnown RBP13.25□□□□□ -0.29
COL4A1-201ENST00000375820 DLGAP4Q9Y2H0 992 aa13.25□□□□□ -0.29
COL4A1-201ENST00000375820 GRXCR2A6NFK2 248 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 ARVCFO00192 962 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 PLSCR1O15162 318 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 JMJD7P0C870 316 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GALK2Q01415 458 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GAS6Q14393 721 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 FLYWCH1Q4VC44 716 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 AGTRAPQ6RW13 159 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 C2orf15Q8WU43 125 aaKnown RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 TMEM125Q96AQ2 219 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 C14orf119Q9NWQ9 140 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 EDDM13A0A1B0GTR0 161 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 SNHG28P0DPA3 235 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GABRA3P34903 492 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 SLC15A1P46059 708 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 AIMP2Q13155 320 aaKnown RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 WFIKKN2Q8TEU8 576 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 C1orf21Q9H246 121 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 REV1Q9UBZ9 1251 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 NUFIP1Q9UHK0 495 aaKnown RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 CFL2Q9Y281 166 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 NFE2L1Q14494 772 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 OSTM1Q86WC4 334 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 S100A16Q96FQ6 103 aaKnown RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 OR1F2PQ96R84 312 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 RDH8Q9NYR8 311 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 HSD17B2P37059 387 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GLP1RP43220 463 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GPR33Q49SQ1 333 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 LIPKQ5VXJ0 399 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 AKAP1Q92667 903 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 TCEAL3Q969E4 200 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 LRCH3Q96II8 777 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 BCO2Q9BYV7 579 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 USP29Q9HBJ7 922 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 WASF3Q9UPY6 502 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 PCDHGB1Q9Y5G3 927 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 A0A0G2JLL6 359 aaPredicted RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 SOCS2O14508 198 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 ABLIM1O14639 778 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 HCRTR2O43614 444 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 AHSA1O95433 338 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 NPR2P20594 1047 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 SFT2D3Q587I9 215 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GTF2IRD2BQ6EKJ0 949 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 PRRT2Q7Z6L0 340 aaPredicted RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 GTF2IRD2Q86UP8 949 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 ZC3HC1Q86WB0 502 aaKnown RBP13.24□□□□□ -0.29
COL4A1-201ENST00000375820 ACOT12Q8WYK0 555 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 RIT1Q92963 219 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 FBRSQ9HAH7 460 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 MAN2C1Q9NTJ4 1040 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 TAS2R10Q9NYW0 307 aa13.24□□□□□ -0.29
COL4A1-201ENST00000375820 CD8B2A6NJW9 211 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 CD8BP10966 210 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 RPS3P23396 243 aaKnown RBP eCLIP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 ETV3P41162 512 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 GPX6P59796 221 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 HYAL4Q2M3T9 481 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 TMEM44Q2T9K0 475 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 MS4A13Q5J8X5 152 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 PAMR1Q6UXH9 720 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 TMCO2Q7Z6W1 182 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 NPAS3Q8IXF0 933 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 CELF5Q8N6W0 485 aaKnown RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 OR10A4Q9H209 315 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 SARDHQ9UL12 918 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 RNF6Q9Y252 685 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 TCRBV21S2A2A0A5A6 115 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 PPM1BO75688 479 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 MAGEA3P43357 314 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 STK19P49842 368 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 RPS26P62854 115 aaKnown RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 SRYQ05066 204 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 KANK2Q63ZY3 851 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 SLC36A4Q6YBV0 504 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 C12orf40Q86WS4 652 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 ZNF514Q96K75 400 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 TMEM109Q9BVC6 243 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 MOV10Q9HCE1 1003 aaKnown RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 OR2S2Q9NQN1 319 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 HSPB11Q9Y547 144 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 ZNF705EA8MWA4 302 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 FOXD2O60548 495 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 GTF2F2P13984 249 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 PMS2P3Q13401 168 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 GPRC6AQ5T6X5 926 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 NSUN5Q96P11 429 aaKnown RBP13.23□□□□□ -0.29
COL4A1-201ENST00000375820 TDP1Q9NUW8 608 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 DISC1C4P0D8 188 aa13.23□□□□□ -0.29
COL4A1-201ENST00000375820 DLDP09622 509 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms