RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ADGRF4Q8IZF3 695 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CAMKVQ8NCB2 501 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DMBX1Q8NFW5 382 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GPR152Q8TDT2 470 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GGHQ92820 318 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ULBP1Q9BZM6 244 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MRPS30Q9NP92 439 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 BATF3Q9NR55 127 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MRPL15Q9P015 296 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MYOTQ9UBF9 498 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FZD10Q9ULW2 581 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RNF6Q9Y252 685 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA0232Q92628 1395 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 LAMC3Q9Y6N6 1575 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CACNA1GO43497 2377 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF860A6NHJ4 632 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SAP18O00422 153 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 P04436 131 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 POU2F1P14859 743 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 IMPDH1P20839 514 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CPN2P22792 545 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NMT1P30419 496 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RBMXP38159 391 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 YAP1P46937 504 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ART1P52961 327 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PLA2G16P53816 162 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DCDC1P59894 354 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NRG1Q02297 640 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DSC3Q14574 896 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SNRNP35Q16560 246 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CCDC58Q4VC31 144 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 C11orf63Q6NUN7 778 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MOXD1Q6UVY6 613 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DHDDSQ86SQ9 333 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FMR1NBQ8N0W7 255 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF597Q96LX8 424 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 INTS14Q96SY0 518 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 L2HGDHQ9H9P8 463 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ABCC13Q9NSE7 274 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NAGKQ9UJ70 344 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RAPGEF6Q8TEU7 1601 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NCOR1O75376 2440 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NUP205Q92621 2012 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 C20orf202A1L168 122 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 LRP5LA4QPB2 252 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NPEPPSL1A6NEC2 478 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM181BA6NEQ2 426 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PRR5-ARHGAP8B1AHC4 643 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM86B1E9PN63 330 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 AQP5P55064 265 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM110CQ1W6H9 321 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ASTE1Q2TB18 679 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 LRIF1Q5T3J3 769 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 LYPLAL1Q5VWZ2 237 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SHC4Q6S5L8 630 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CFAP77Q6ZQR2 320 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SLC44A5Q8NCS7 719 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 IL17REQ8NFR9 667 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF519Q8TB69 540 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FGGYQ96C11 551 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TCTN2Q96GX1 697 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TBL1YQ9BQ87 522 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KCNK13Q9HB14 408 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OBP2BQ9NPH6 170 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PDP1Q9P0J1 537 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PISDQ9UG56 409 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PCDHA9Q9Y5H5 950 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 COL17A1Q9UMD9 1497 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DAPL1A0PJW8 107 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF732B4DXR9 585 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 F9P00740 461 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NUDT7P0C024 238 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PSMA1P25786 263 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CCND3P30281 292 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ADARP55265 1226 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PRKCZQ05513 592 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 VWA2Q5GFL6 755 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HES5Q5TA89 166 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TTC27Q6P3X3 843 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DBX2Q6ZNG2 339 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CBR4Q8N4T8 237 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HJURPQ8NCD3 748 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SMG8Q8ND04 991 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR2G2Q8NGZ5 317 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NKX2-3Q8TAU0 364 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MOAP1Q96BY2 351 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NMUR2Q9GZQ4 415 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TFB2MQ9H5Q4 396 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ALG9Q9H6U8 611 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DNAJC18Q9H819 358 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GFOD1Q9NXC2 390 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TOPBP1Q92547 1522 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ATP10DQ9P241 1426 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1B0GTW7 788 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FABP12A6NFH5 140 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CBY3A6NI87 242 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CEBPZOSA8MTT3 80 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 F5H697 171 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 H3BVH4 76 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PRAMEF11O60813 436 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms