RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZNF548Q8NEK5 533 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 DPY30Q9C005 99 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 ACTR8Q9H981 624 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 FARSBQ9NSD9 589 aaKnown RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 C1orf109Q9NX04 203 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 BTBD3Q9Y2F9 522 aa13.7□□□□□ -0.22
HMGA1-203ENST00000374116 ARHGEF17Q96PE2 2063 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-203ENST00000374116 TMX2-CTNND1H3BSU7 103 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SOCS2O14508 198 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TNFRSF10CO14798 259 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 RGS13O14921 159 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 KDM1AO60341 852 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 DGKQP52824 942 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 HSPA14Q0VDF9 509 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 GTF2H3Q13889 308 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ZNF846Q147U1 533 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SLC36A3Q495N2 470 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TMTC4Q5T4D3 741 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TMEM26Q6ZUK4 368 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 LIX1Q8N485 282 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 OR13F1Q8NGS4 319 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 FAM110BQ8TC76 370 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SLC13A3Q8WWT9 602 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 MAGEB10Q96LZ2 347 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 PPM1MQ96MI6 270 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 CAMK1GQ96NX5 476 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 OSGEPL1Q9H4B0 414 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ERVMER34-1Q9H9K5 563 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TMEM9BQ9NQ34 198 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 IFT52Q9Y366 437 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 DGKBQ9Y6T7 804 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ARID1BQ8NFD5 2236 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TRBV23OR9-2A0A075B6M9 112 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SAC3D1A6NKF1 404 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 DLGAP1O14490 977 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 VEGFDO43915 354 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 LRP3O75074 770 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 NCK1P16333 377 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 CYP2A7P20853 494 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 HRH2P25021 359 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 RPL10P27635 214 aaKnown RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 EPHA8P29322 1005 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SLC6A12P48065 614 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 AP1S2P56377 157 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 HNRNPKP61978 463 aaKnown RBP eCLIP13.69□□□□□ -0.226e-30■□□□□ 9.8
HMGA1-203ENST00000374116 HMGCS1Q01581 520 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ATP6AP1Q15904 470 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ZNF658BQ4V348 819 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SGO1Q5FBB7 561 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 GPR107Q5VW38 600 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 GLYATQ6IB77 296 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 TAF8Q7Z7C8 310 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 C11orf96Q7Z7L8 435 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 LRRTM4Q86VH4 590 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 NRROSQ86YC3 692 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 FAM9CQ8IZT9 166 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ZNF786Q8N393 782 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 CBR4Q8N4T8 237 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ARL10Q8N8L6 244 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 DNAJB8Q8NHS0 232 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SAP25Q8TEE9 199 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 RAB2BQ8WUD1 216 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SCARF2Q96GP6 870 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 NSMCE2Q96MF7 247 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 OR2M4Q96R27 311 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ADI1Q9BV57 179 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ZDHHC5Q9C0B5 715 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 WDR12Q9GZL7 423 aaKnown RBP13.69□□□□□ -0.22
HMGA1-203ENST00000374116 ANKMY1Q9P2S6 941 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 SNX6Q9UNH7 406 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 AP3M1Q9Y2T2 418 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 NOX1Q9Y5S8 564 aa13.69□□□□□ -0.22
HMGA1-203ENST00000374116 J3QRK9 145 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 QSOX1O00391 747 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 YY2O15391 372 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 FOXD2O60548 495 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-203ENST00000374116 EML2O95834 649 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 BCL10O95999 233 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 PCYT1AP49585 367 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 OR4D2P58180 307 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 NFE2L1Q14494 772 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 PTGR1Q14914 329 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 MAPKAPK3Q16644 382 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 SPRED1Q7Z699 444 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 CADM3Q8N126 398 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 MCOLN3Q8TDD5 553 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 SKA2Q8WVK7 121 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-203ENST00000374116 ASZ1Q8WWH4 475 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 PATE1Q8WXA2 126 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 GTF2H4Q92759 462 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 FBXL8Q96CD0 374 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 SH3GL1Q99961 368 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 CLMPQ9H6B4 373 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 GULP1Q9UBP9 304 aa13.68□□□□□ -0.22
HMGA1-203ENST00000374116 GOLGA4Q13439 2230 aaKnown RBP13.68□□□□□ -0.22
HMGA1-203ENST00000374116 DCHS1Q96JQ0 3298 aa13.67□□□□□ -0.22
HMGA1-203ENST00000374116 SERTM1A2A2V5 107 aa13.67□□□□□ -0.22
HMGA1-203ENST00000374116 FAM149AA5PLN7 773 aa13.67□□□□□ -0.22
HMGA1-203ENST00000374116 H3BM21 787 aa13.67□□□□□ -0.22
HMGA1-203ENST00000374116 SLC22A1O15245 554 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms