RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RASAL1O95294 804 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 S100BP04271 92 aaPredicted RBP20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 MAOAP21397 527 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 CRABP2P29373 138 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 TAS2R50P59544 299 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 TUBA3CQ13748 450 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 RUNX2Q13950 521 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 DOC2AQ14183 400 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 SLMAPQ14BN4 828 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 EFTUD2Q15029 972 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 PDK4Q16654 411 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ADPRMQ3LIE5 342 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 XKR6Q5GH73 641 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 C8orf74Q6P047 294 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 TUBA3EQ6PEY2 450 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 RAPH1Q70E73 1250 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 LGI4Q8N135 537 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 DNAJB8Q8NHS0 232 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 PTCD3Q96EY7 689 aaKnown RBP20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 LRRC1Q9BTT6 524 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 EFCAB11Q9BUY7 163 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ALG9Q9H6U8 611 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 NMRAL1Q9HBL8 299 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 NECTIN3Q9NQS3 549 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 IGSF5Q9NSI5 407 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ZDHHC18Q9NUE0 388 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 NUDT4Q9NZJ9 180 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ZNF490Q9ULM2 529 aaPredicted RBP20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 PCDHGB6Q9Y5F9 930 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 NAV2Q8IVL1 2488 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 MAST4O15021 2626 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 ZGRF1Q86YA3 2104 aa20.35■□□□□ 0.85
CCDC28B-201ENST00000373602 A0A0G2JN53 185 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 A1L4Q6 167 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 SAGE2PA6NJ88 616 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 CRYABP02511 175 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 EPORP19235 508 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 TFEBP19484 476 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 CD22P20273 847 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 HPDP32754 393 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 CD96P40200 585 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 ZNF766Q5HY98 468 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 HIST2H2BCQ6DN03 193 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 LRRC70Q7Z2Q7 622 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 TBC1D1Q86TI0 1168 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 CYP4X1Q8N118 509 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 MDS2Q8NDY4 140 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 ARMC2Q8NEN0 867 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 OR2L5Q8NG80 312 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 EXT2Q93063 718 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 QRFPRQ96P65 431 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 ATOH8Q96SQ7 321 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 UTP23Q9BRU9 249 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 CD244Q9BZW8 370 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 MMACHCQ9Y4U1 282 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 ASB1Q9Y576 335 aa20.34■□□□□ 0.85
CCDC28B-201ENST00000373602 DOPEY1Q5JWR5 2465 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 A0A088AWK7 358 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 CCNT2O60583 730 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 KERAO60938 352 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 STSP08842 583 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 LTA4HP09960 611 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 ZNF10P21506 573 aaPredicted RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 LAPTM5Q13571 262 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 E2F2Q14209 437 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 TBCCQ15814 346 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 ADNP2Q6IQ32 1131 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 RPS19BP1Q86WX3 136 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 KIF2BQ8N4N8 673 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 NFAM1Q8NET5 270 aaPredicted RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 SIGLEC12Q96PQ1 595 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 REXO4Q9GZR2 422 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 CDCP1Q9H5V8 836 aa20.33■□□□□ 0.85
CCDC28B-201ENST00000373602 GABRR3A8MPY1 467 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 CDK2AP1O14519 115 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 LRRTM2O43300 516 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 B3GALT2O43825 422 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 MST1P26927 711 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 CASP2P42575 452 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 PLA2G16P53816 162 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 RAB38P57729 211 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 IRF8Q02556 426 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 CHIT1Q13231 466 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 OR1C1Q15619 314 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 WHAMMP3Q1A5X7 153 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 PAGE2BQ5JRK9 111 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 TRIM40Q6P9F5 258 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 ABHD17CQ6PCB6 329 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 CCDC91Q7Z6B0 441 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 SCUBE1Q8IWY4 988 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 ADAMTS18Q8TE60 1221 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 UBTD2Q8WUN7 234 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 C16orf45Q96MC5 204 aaPredicted RBP20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 ANKRD10Q9NXR5 420 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 ACOT9Q9Y305 439 aa20.32■□□□□ 0.84
CCDC28B-201ENST00000373602 SUPT3HB4E1H0 165 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 UBXN8O00124 270 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 SUPT3HO75486 399 aa20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 URI1O94763 535 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-201ENST00000373602 CLDN1O95832 211 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms