RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 COG8Q96MW5 612 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 SORT1Q99523 831 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 NRTNQ99748 197 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 HIST1H2AJQ99878 128 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 TIMM29Q9BSF4 260 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 TSSK1BQ9BXA7 367 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 TMEM168Q9H0V1 697 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 RMI1Q9H9A7 625 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 TM9SF3Q9HD45 589 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 NECTIN3Q9NQS3 549 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 KLC4Q9NSK0 619 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 GALNT8Q9NY28 637 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 UTP6Q9NYH9 597 aaKnown RBP3.43□□□□□ -1.86
MCF2-202ENST00000370573 NCKIPSDQ9NZQ3 722 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 KCMF1Q9P0J7 381 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 CIDEBQ9UHD4 219 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 PSMD13Q9UNM6 376 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 KCNK6Q9Y257 313 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 WDR37Q9Y2I8 494 aa3.43□□□□□ -1.86
MCF2-202ENST00000370573 FRYLO94915 3013 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PRAMEF33A0A0G2JMD5 474 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SPTY2D1-AS1A0A0U1RR47 76 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SRRM3A6NNA2 597 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 MEI4A8MW99 385 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SUPT3HB4E1H0 165 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PYCARD-AS1I3L0S3 204 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 FCHO1O14526 889 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 UBFD1O14562 309 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 KLF11O14901 512 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SLC16A5O15375 505 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SMIM24O75264 130 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PSIP1O75475 530 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 SUPT3HO75486 399 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GUCA1CO95843 209 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SERPINE1P05121 402 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 C8GP07360 202 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 VIMP08670 466 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 TSPAN8P19075 237 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 DDCP20711 480 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 IMPDH1P20839 514 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 AK4P27144 223 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 CD38P28907 300 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 AVPR2P30518 371 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 BDKRB1P46663 353 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CSNK1EP49674 416 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 THOP1P52888 689 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 IL13RA1P78552 427 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 BNC1Q01954 994 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SF3A3Q12874 501 aaKnown RBP eCLIP3.42□□□□□ -1.86
MCF2-202ENST00000370573 STX3Q13277 289 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GRB7Q14451 532 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RAB39AQ14964 217 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CLCA4Q14CN2 919 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PLK5Q496M5 336 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SYTL3Q4VX76 610 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PRAMEF14Q5SWL7 426 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZNF678Q5SXM1 525 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 LIPMQ5VYY2 423 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CAPRIN2Q6IMN6 1127 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 FAM47EQ6ZV65 393 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ADAMTSL2Q86TH1 951 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GALNT13Q8IUC8 556 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CCNYL1Q8N7R7 359 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 OR5AN1Q8NGI8 311 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SKA2Q8WVK7 121 aaPredicted RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 TMEM159Q96B96 161 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RHBDF1Q96CC6 855 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 L3HYPDHQ96EM0 354 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CHMP6Q96FZ7 201 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TMEM237Q96Q45 408 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 OR2M4Q96R27 311 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CCT8L2Q96SF2 557 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PKP4Q99569 1192 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PITPNM3Q9BZ71 974 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 WWP1Q9H0M0 922 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 OR10A5Q9H207 317 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GHITMQ9H3K2 345 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 GSTO2Q9H4Y5 243 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 RDH14Q9HBH5 336 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PARVBQ9HBI1 364 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SERHLQ9NQF3 203 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PRDM8Q9NQV8 689 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 FGFR1OP2Q9NVK5 253 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PSD3Q9NYI0 1048 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 NKIRAS2Q9NYR9 191 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 NUDT4Q9NZJ9 180 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 CD274Q9NZQ7 290 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 KLQ9UEF7 1012 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TBC1D29Q9UFV1 150 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 PTBP2Q9UKA9 531 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 OARD1Q9Y530 152 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 LRP4O75096 1905 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 WDFY4Q6ZS81 3184 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 VPS13AQ96RL7 3174 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZFC3H1O60293 1989 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 TDRD6O60522 2096 aaKnown RBP3.42□□□□□ -1.86
MCF2-202ENST00000370573 ZNF839A8K0R7 811 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 SYCE1LA8MT33 242 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 STX16-NPEPL1H3BU86 382 aa3.42□□□□□ -1.86
MCF2-202ENST00000370573 TLR4O00206 839 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms