RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SH2B3Q9UQQ2 575 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 RPH3AQ9Y2J0 694 aaPredicted RBP12.9□□□□□ -0.34
VPS29-201ENST00000360579 MED16Q9Y2X0 877 aa12.9□□□□□ -0.34
VPS29-201ENST00000360579 TRBC2A0A5B9 178 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 A8MVJ9 347 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 PROM1O43490 865 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 SERPIND1P05546 499 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 HIST1H2AGP0C0S8 130 aaPredicted RBP12.89□□□□□ -0.35
VPS29-201ENST00000360579 GLI4P10075 376 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 NPPBP16860 134 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 HIST1H2ADP20671 130 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 MAOAP21397 527 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 KIR2DL3P43628 341 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 SP140Q13342 867 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 NAE1Q13564 534 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 CCNG2Q16589 344 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 ZNF585AQ6P3V2 769 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 CASC4Q6P4E1 433 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 DRICH1Q6PGQ1 229 aaPredicted RBP12.89□□□□□ -0.35
VPS29-201ENST00000360579 RAD9BQ6WBX8 426 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 GK5Q6ZS86 529 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 GSTA5Q7RTV2 222 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 LMNTD2Q8IXW0 634 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 ZZZ3Q8IYH5 903 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 CPNE9Q8IYJ1 553 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 GPATCH11Q8N954 259 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 OR4K1Q8NGD4 311 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 OR5M9Q8NGP3 310 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 NT5CQ8TCD5 201 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 CD200R1Q8TD46 325 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 ALKBH8Q96BT7 664 aaKnown RBP12.89□□□□□ -0.35
VPS29-201ENST00000360579 MBD6Q96DN6 1003 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 HIST1H2AHQ96KK5 128 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 HIST1H2AJQ99878 128 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 GPATCH1Q9BRR8 931 aaKnown RBP12.89□□□□□ -0.35
VPS29-201ENST00000360579 H2AFJQ9BTM1 129 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 ATG10Q9H0Y0 220 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 PARVBQ9HBI1 364 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 HPF1Q9NWY4 346 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 KCMF1Q9P0J7 381 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 SAMD15Q9P1V8 674 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 PPIEQ9UNP9 301 aaKnown RBP12.89□□□□□ -0.35
VPS29-201ENST00000360579 PDE10AQ9Y233 779 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 MMACHCQ9Y4U1 282 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 AKAP6Q13023 2319 aa12.89□□□□□ -0.35
VPS29-201ENST00000360579 SCN3AQ9NY46 2000 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 A0A0G2JNJ9 132 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 MAGEB16A2A368 324 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 SYNDIG1LA6NDD5 238 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 PABPN1LA6NDY0 278 aaKnown RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 FAM166BA8MTA8 275 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 A8MUA0 341 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 SLC16A5O15375 505 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 WDR1O75083 606 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 AVILO75366 819 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZFAND5O76080 213 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 MYO1DO94832 1006 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 IGHG3P01860 377 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZNF888P0CJ79 500 aaPredicted RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 RGS4P49798 205 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 DLX5P56178 289 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 ADAM8P78325 824 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 DHX34Q14147 1143 aaKnown RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 BBS9Q3SYG4 887 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 UGT3A1Q6NUS8 523 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZNF549Q6P9A3 640 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 OR2M7Q8NG81 312 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 UTP15Q8TED0 518 aaKnown RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 ASB15Q8WXK1 588 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZDHHC16Q969W1 377 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 LRRC46Q96FV0 321 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 TTTY12Q9BZ98 90 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 NECTIN3Q9NQS3 549 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 FBXO6Q9NRD1 293 aaPredicted RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZFATQ9P243 1243 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 B4GALT7Q9UBV7 327 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 Q9UFV3 132 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 TRMT6Q9UJA5 497 aaKnown RBP12.88□□□□□ -0.35
VPS29-201ENST00000360579 ZFP69BQ9UJL9 534 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 PLEKHA6Q9Y2H5 1048 aa12.88□□□□□ -0.35
VPS29-201ENST00000360579 A0A1B0GVC2 190 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 DNAJB6O75190 326 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 AHRP35869 848 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 LTBQ06643 244 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 CTBP1Q13363 440 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 HECTD2Q5U5R9 776 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 DENND6AQ8IWF6 608 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 MYO1HQ8N1T3 1032 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 FAM109AQ8N4B1 249 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 TRPV3Q8NET8 790 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 CALML6Q8TD86 181 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 SARAFQ96BY9 339 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 SNF8Q96H20 258 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 LIME1Q9H400 295 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 DEPPQ9NTK1 212 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 ADAMTS6Q9UKP5 1117 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 ACAD8Q9UKU7 415 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 ZKSCAN5Q9Y2L8 839 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 FAM215AQ9Y5M1 114 aa12.87□□□□□ -0.35
VPS29-201ENST00000360579 PHF3Q92576 2039 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms