RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 DLX3O60479 287 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 OTCP00480 354 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 HPP00738 406 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 TGFB1P01137 390 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 FHP07954 510 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 ICAM2P13598 275 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 IMPDH1P20839 514 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 PTX3P26022 381 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-201ENST00000332345 PRKAA2P54646 552 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 HERVK_113P63132 956 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 OLR1P78380 273 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 RCN2Q14257 317 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 DEPDC1Q5TB30 811 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 ABHD17CQ6PCB6 329 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 ASB18Q6ZVZ8 466 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 FDCSPQ8NFU4 85 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 HUS1BQ8NHY5 278 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 C8orf44Q96CB5 159 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 SERINC2Q96SA4 455 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 TBCDQ9BTW9 1192 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 ERVK-6Q9BXR3 956 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 MS4A8Q9BY19 250 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 AICDAQ9GZX7 198 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 MLXIPLQ9NP71 852 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 TP53TG5Q9Y2B4 290 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 RNF11Q9Y3C5 154 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 ZNF451Q9Y4E5 1061 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 NUP210LQ5VU65 1888 aa13.22□□□□□ -0.29
LIMS1-201ENST00000332345 BSNQ9UPA5 3926 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 BOD1L1Q8NFC6 3051 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 DOCK10Q96BY6 2186 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 LOC102723996A0A087X1L8 192 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 A0A0G2JN53 185 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 FOXO6A8MYZ6 492 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 FOXE1O00358 373 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 PRMT3O60678 531 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 DNAJB6O75190 326 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 SUPT7LO94864 414 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 TBX6O95947 436 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ALPPP05187 535 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 RPS17P08708 135 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 MYL2P10916 166 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ITGA3P26006 1051 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 MTTPP55157 894 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 AP2B1P63010 937 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 SLC18A2Q05940 514 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ACTN3Q08043 901 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 DDX39BQ13838 428 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 MYBPC3Q14896 1274 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ZRSR2Q15696 482 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 NSDHLQ15738 373 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 AP5B1Q2VPB7 878 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ZNF678Q5SXM1 525 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 C10orf62Q5T681 223 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 KHDRBS2Q5VWX1 349 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 TTC19Q6DKK2 380 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ADNP2Q6IQ32 1131 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 CPEB2Q7Z5Q1 589 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 HPS6Q86YV9 775 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 PARP9Q8IXQ6 854 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 CA13Q8N1Q1 262 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 OR52B6Q8NGF0 335 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ZNF483Q8TF39 744 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 RGMAQ96B86 450 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 NSUN5Q96P11 429 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 QRFPRQ96P65 431 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 MTERF1Q99551 399 aaKnown RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 TMEM109Q9BVC6 243 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ZNF700Q9H0M5 742 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 ZBTB26Q9HCK0 441 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 SEMA4BQ9NPR2 832 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 PRDM7Q9NQW5 492 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 RIC8BQ9NVN3 520 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 C5AR2Q9P296 337 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 PLAAQ9Y263 795 aa13.21□□□□□ -0.29
LIMS1-201ENST00000332345 HEMK1Q9Y5R4 338 aaPredicted RBP13.21□□□□□ -0.29
LIMS1-201ENST00000332345 KALRNO60229 2985 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 IGHV1-45A0A0A0MS14 117 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 A0A1W2PQ72 361 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 MAGEB17A8MXT2 336 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 C4orf51C9J302 202 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 CLDN4O14493 209 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 B4GALT2O60909 372 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 CDC123O75794 336 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 C1QL1O75973 258 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 MLYCDO95822 493 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 TSFMP43897 325 aaKnown RBP13.2□□□□□ -0.3
LIMS1-201ENST00000332345 RAP1GDS1P52306 607 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 ARFIP1P53367 373 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 CDH13P55290 713 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 NAA20P61599 178 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 RHAGQ02094 409 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 CLCQ05315 142 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 IFT88Q13099 833 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 RUNX2Q13950 521 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 ABRAXAS2Q15018 415 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 UNC50Q53HI1 259 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 VWA5B1Q5TIE3 1220 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 OR4C11Q6IEV9 310 aa13.2□□□□□ -0.3
LIMS1-201ENST00000332345 KBTBD2Q8IY47 623 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms