RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 RHCEP18577 417 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ETV3P41162 512 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 SPINT3P49223 89 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 CD83Q01151 205 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ZNHIT3Q15649 155 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-201ENST00000323668 THOC7Q6I9Y2 204 aaKnown RBP14.18□□□□□ -0.14
TCOF1-201ENST00000323668 B3GNT8Q7Z7M8 397 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ACOT13Q9NPJ3 140 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 SACM1LQ9NTJ5 587 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 JRKO75564 520 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 OR5F1O95221 314 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 IDSP22304 550 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ARL4DP49703 201 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 RGNQ15493 299 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 KIAA1161Q6NSJ0 714 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 TESCQ96BS2 214 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 FRMD6Q96NE9 622 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 MAT2BQ9NZL9 334 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 TAC3Q9UHF0 121 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 PHF11Q9UIL8 331 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ABCG2Q9UNQ0 655 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 SMAD6O43541 496 aaKnown RBP14.18□□□□□ -0.14
TCOF1-201ENST00000323668 AKAP8O43823 692 aaKnown RBP14.18□□□□□ -0.14
TCOF1-201ENST00000323668 HSD17B2P37059 387 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 CLCN7P51798 805 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 ZNF33BQ06732 778 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 PNCKQ6P2M8 343 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 OR8J1Q8NGP2 316 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 TFGQ92734 400 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-201ENST00000323668 GLYATL1Q969I3 302 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 NUS1Q96E22 293 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 TSSK6Q9BXA6 273 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 CMAHPQ9Y471 501 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 BACE2Q9Y5Z0 518 aa14.18□□□□□ -0.14
TCOF1-201ENST00000323668 UPK1BO75841 260 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 CYBAP13498 195 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 AMD1P17707 334 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 TNFRSF1BP20333 461 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 UQCRC2P22695 453 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 LGALS3BPQ08380 585 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SMN1Q16637 294 aaKnown RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 WSCD2Q2TBF2 565 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 DLEU7Q6UYE1 221 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 MARCH9Q86YJ5 346 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SLC22A15Q8IZD6 547 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 OR8H1Q8NGG4 311 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SMG7Q92540 1137 aaKnown RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 BHLHE41Q9C0J9 482 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ERVK-11Q9UQG0 969 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PRSS21Q9Y6M0 314 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 TLL1O43897 1013 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 HMGN1P05114 100 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PGFP49763 221 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SELENOWP63302 87 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ZXDBP98169 803 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SBSNQ6UWP8 590 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 IKBIPQ70UQ0 350 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 TMEM151AQ8N4L1 468 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ZNF655Q8N720 491 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 GPR26Q8NDV2 337 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 RHOXF1Q8NHV9 184 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 CPPED1Q9BRF8 314 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PAK6Q9NQU5 681 aaPredicted RBP14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ERVK13-1Q9NX77 482 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ACSL6Q9UKU0 697 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 FAM92AA1XBS5 289 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 CSF2P04141 144 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 HLA-DPB1P04440 258 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PCCBP05166 539 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 RB1P06400 928 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 EPHX1P07099 455 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 HK3P52790 923 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ARF5P84085 180 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 C17orf99Q6UX52 265 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 CDH7Q9ULB5 785 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PCDHGB6Q9Y5F9 930 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 LEFTY2O00292 366 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 ALPPP05187 535 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 GINS1Q14691 196 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PTPRRQ15256 657 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 IDNKQ5T6J7 187 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 LIPKQ5VXJ0 399 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 PEX5LQ8IYB4 626 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 KLHL36Q8N4N3 616 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 OR52N2Q8NGI0 321 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 TMEM106CQ9BVX2 250 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SMURF1Q9HCE7 757 aa14.17□□□□□ -0.14
TCOF1-201ENST00000323668 SH3D21A4FU49 640 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 NPIPB15A6NHN6 443 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-201ENST00000323668 ACADMP11310 421 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 TYRP14679 529 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 CSNK2A2P19784 350 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-201ENST00000323668 TACR1P25103 407 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 AVPR1BP47901 424 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 CCR4P51679 360 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 ZNF648Q5T619 568 aaPredicted RBP14.16□□□□□ -0.14
TCOF1-201ENST00000323668 MEDAGQ5VYS4 303 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 SMARCD3Q6STE5 483 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 SNX29P2Q8IUI4 249 aa14.16□□□□□ -0.14
TCOF1-201ENST00000323668 SMPDL3AQ92484 453 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms