RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SLC38A6Q8IZM9 456 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 SUN5Q8TC36 379 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 GPR151Q8TDV0 419 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 UPF1Q92900 1129 aaKnown RBP eCLIP12.89□□□□□ -0.35
SKA3-202ENST00000314759 COQ8BQ96D53 544 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 C2orf49Q9BVC5 232 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 ZNF556Q9HAH1 456 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 RPRD1BQ9NQG5 326 aaKnown RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 ACER3Q9NUN7 267 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 EFCAB10A6NFE3 127 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 MTX2O75431 263 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 TNFRSF21O75509 655 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 SLC10A3P09131 477 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 C1SP09871 688 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 MPC1LP0DKB6 136 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 LHCGRP22888 699 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PTX3P26022 381 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 TIE1P35590 1138 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 RPS19P39019 145 aaKnown RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 AP1S2P56377 157 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 ZNF648Q5T619 568 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 ANXA8L1Q5VT79 327 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 CAMKMTQ7Z624 323 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 NOXA1Q86UR1 476 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 HJURPQ8NCD3 748 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 FLCNQ8NFG4 579 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 OR4K1Q8NGD4 311 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 WDR36Q8NI36 951 aaKnown RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 CHTF18Q8WVB6 975 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 SLC22A12Q96S37 553 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 LYSMD1Q96S90 227 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 FAM129BQ96TA1 746 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 CNPPD1Q9BV87 410 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 BARHL1Q9BZE3 327 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 TIGARQ9NQ88 270 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 CRNNQ9UBG3 495 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 EXO1Q9UQ84 846 aaKnown RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 GRIP1Q9Y3R0 1128 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PCM1Q15154 2024 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PLXNB3Q9ULL4 1909 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 HMX3A6NHT5 357 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 H3BM21 787 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 UGDHO60701 494 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 DGKEP52429 567 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PTPN5P54829 565 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 CDC42P60953 191 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 HBA1P69905 142 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 CD83Q01151 205 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PLD1Q13393 1074 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 ZNF385BQ569K4 471 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 PLAG1Q6DJT9 500 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 TPRG1Q6ZUI0 275 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 NLRP8Q86W28 1048 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 THOC6Q86W42 341 aaKnown RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 ST13P5Q8NFI4 369 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 TMCO6Q96DC7 493 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 SCRN2Q96FV2 425 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 MED30Q96HR3 178 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 MAGEB10Q96LZ2 347 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 NECTIN4Q96NY8 510 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 OPALINQ96PE5 141 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 C3orf14Q9HBI5 128 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 SMURF1Q9HCE7 757 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 GIMAP4Q9NUV9 329 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 ZNF282Q9UDV7 671 aaPredicted RBP12.89□□□□□ -0.35
SKA3-202ENST00000314759 CLEC4EQ9ULY5 219 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 V9GYH0 126 aa12.89□□□□□ -0.35
SKA3-202ENST00000314759 LOC105371267A0A1B0GV96 52 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ZSCAN5BA6NJL1 495 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 A8MVJ9 347 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SLC16A5O15375 505 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 GALTP07902 379 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 CD72P21854 359 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SERPINA4P29622 427 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 MAPK8P45983 427 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ASMTP46597 345 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 LIMS1P48059 325 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ZNF33BQ06732 778 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SP140Q13342 867 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 GANABQ14697 944 aaKnown RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 ZNF79Q15937 498 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SLC8B1Q6J4K2 584 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 PTCHD4Q6ZW05 846 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 GPR156Q8NFN8 814 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 NFKBIDQ8NI38 313 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 VANGL1Q8TAA9 524 aaPredicted RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 ASPNQ9BXN1 380 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SLA2Q9H6Q3 261 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 HHATLQ9HCP6 504 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 THSD1Q9NS62 852 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 CNOT2Q9NZN8 540 aaKnown RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 KLHL20Q9Y2M5 609 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 HCN4Q9Y3Q4 1203 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SH3D21A4FU49 640 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 MGAT4DA6NG13 374 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 RNASET2O00584 256 aaKnown RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 GREM1O60565 184 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 CCND3P30281 292 aaPredicted RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 CNR2P34972 360 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 HNF4AP41235 474 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms