RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 FAM196BA6NMK8 535 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 GADD45GO95257 159 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ALOX12P18054 663 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 AHRP35869 848 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ADAM17P78536 824 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TAP2Q03519 686 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TGFBIQ15582 683 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TXNDC8Q6A555 127 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ZNF765Q7L2R6 523 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SLC9B2Q86UD5 537 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 RETREG3Q86VR2 466 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NPAS3Q8IXF0 933 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TM9SF4Q92544 642 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 DIRAS2Q96HU8 199 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NARS2Q96I59 477 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 MYADMQ96S97 322 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PNMA8BQ9ULN7 279 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 BRCA1P38398 1863 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 LTBP4Q8N2S1 1624 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ARP10275 920 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 FOSL2P15408 326 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 EPORP19235 508 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 MMP12P39900 470 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PSMD8P48556 350 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 CLDN8P56748 225 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NEDD8Q15843 81 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 C16orf59Q7L2K0 433 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 UBQLNLQ8IYU4 475 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PHOSPHO2Q8TCD6 241 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SFXN5Q8TD22 340 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SMARCD2Q92925 531 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NELL2Q99435 816 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 DNAJC5BQ9UF47 199 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 EGFP01133 1207 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NPR2P20594 1047 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 BMP6P22004 513 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NRF1Q16656 503 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PUS10Q3MIT2 529 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 ALG1LQ6GMV1 187 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SLC30A10Q6XR72 485 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 RBM44Q6ZP01 1051 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 LRRTM4Q86VH4 590 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PCED1BQ96HM7 432 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 NTMT1Q9BV86 223 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SGK2Q9HBY8 427 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ABRACLQ9P1F3 81 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 KCNG2Q9UJ96 466 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ALPPP05187 535 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 HLA-EP13747 358 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 GOT1P17174 413 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 AGXTP21549 392 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ASPAP45381 313 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SP3Q02447 781 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TOMM20Q15388 145 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 C10orf53Q8N6V4 93 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TAAR1Q96RJ0 339 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 DHRS4Q9BTZ2 278 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 DUSP26Q9BV47 211 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 OBP2AQ9NY56 170 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 PDP1Q9P0J1 537 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 TMEM200CA6NKL6 621 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 KCNJ2P63252 427 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 CLPPQ16740 277 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 EOGTQ5NDL2 527 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ZNF709Q8N972 641 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 UBASH3BQ8TF42 649 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 CDT1Q9H211 546 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SMOXQ9NWM0 555 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ALG5Q9Y673 324 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TMEM150CB9EJG8 249 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 KLK3P07288 261 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 S100A2P29034 98 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 RPL7AP62424 266 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 NKX3-2P78367 333 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 RHAGQ02094 409 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 MIB1Q86YT6 1006 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 TOMM5Q8N4H5 51 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 KIF2BQ8N4N8 673 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 FAM98AQ8NCA5 519 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 ZNF417Q8TAU3 575 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 HSPA12BQ96MM6 686 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 LRRN3E7EW58 273 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 CDC7O00311 574 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ZNF780AO75290 641 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 ITGAMP11215 1152 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 CSTF2P33240 577 aaKnown RBP eCLIP3.88□□□□□ -1.79
USH2A-201ENST00000307340 RPL38P63173 70 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 EN1Q05925 392 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 QPCTQ16769 361 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 ATAT1Q5SQI0 421 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 C16orf58Q96GQ5 468 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 LRRN3Q9H3W5 708 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 IMP3Q9NV31 184 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 ARMCX1Q9P291 453 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 KDELR3O43731 214 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 EVI2BP34910 448 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 AFF1P51825 1210 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 SLC25A11Q02978 314 aaKnown RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 BMPR2Q13873 1038 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 FAM76BQ5HYJ3 339 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms