RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 TFB2MQ9H5Q4 396 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 CISHQ9NSE2 258 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 COQ4Q9Y3A0 265 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 NDST3O95803 873 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SCGB1D1O95968 90 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 LPOP22079 712 aaPredicted RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HCCSP53701 268 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 DNAJB13P59910 316 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 IRF8Q02556 426 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SSBP1Q04837 148 aaKnown RBP4.7□□□□□ -1.66
CSMD3-201ENST00000297405 KLRC3Q07444 240 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 C3orf38Q5JPI3 329 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 FCRLBQ6BAA4 426 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 DET1Q7L5Y6 550 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 SLC9B2Q86UD5 537 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 HS3ST5Q8IZT8 346 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 C1orf87Q8N0U7 546 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 PRELID2Q8N945 189 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 NEK7Q8TDX7 302 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 EPYCQ99645 322 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 LHX5Q9H2C1 402 aa4.7□□□□□ -1.66
CSMD3-201ENST00000297405 CYB5BO43169 146 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NDUFB10O96000 172 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MPIP34949 423 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CAMLGP49069 296 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 USP17L2Q6R6M4 530 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 UNC93AQ86WB7 457 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GRAMD2AQ8IUY3 354 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 DUSP19Q8WTR2 217 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR1E3Q8WZA6 343 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TMEM176AQ96HP8 235 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PURBQ96QR8 312 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SEMA6CQ9H3T2 930 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RPS10P5Q9NQ39 176 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ITM2CQ9NQX7 267 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RBM22Q9NW64 420 aaKnown RBP eCLIP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FAM120CQ9NX05 1096 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WDR27A2RRH5 827 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 LRP5LA4QPB2 252 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WASHC1A8K0Z3 465 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WASH3PC4AMC7 463 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 C8GP07360 202 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RETP07949 1114 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 BTG1P62324 171 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 LCN6P62502 163 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ARFRP1Q13795 201 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TANGO2Q6ICL3 276 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WDR74Q6RFH5 385 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WASH2PQ6VEQ5 465 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CLRN3Q8NCR9 226 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 WFIKKN1Q96NZ8 548 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 LENG8Q96PV6 779 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ASPNQ9BXN1 380 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GSX2Q9BZM3 304 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR51J1Q9H342 316 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 HMX1Q9NP08 348 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NT5MQ9NPB1 228 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NKIRAS2Q9NYR9 191 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FLVCR2Q9UPI3 526 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF510Q9Y2H8 683 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 RGPD8O14715 1765 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 F6UZH7 168 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CXCR6O00574 342 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TOR1BO14657 336 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 EI24O14681 340 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CETPP11597 493 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SLC5A2P31639 672 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF41P51814 821 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF266Q14584 549 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FAM124AQ86V42 546 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 UNC5CLQ8IV45 518 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FOXRED2Q8IWF2 684 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ZNF34Q8IZ26 560 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CMTM1Q8IZ96 169 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MINDY1Q8N5J2 469 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PNPLA2Q96AD5 504 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CMBLQ96DG6 245 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 FAM84BQ96KN1 310 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SLC25A32Q9H2D1 315 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 NIT2Q9NQR4 276 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SH2B3Q9UQQ2 575 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TMX2Q9Y320 296 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 SIPA1L3O60292 1781 aaPredicted RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 MST1RQ04912 1400 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 C5P01031 1676 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 H3BRB1 525 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 AIFM1O95831 613 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CDC25AP30304 524 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GRK6P43250 576 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PLK1P53350 603 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 TARDBPQ13148 414 aaKnown RBP eCLIP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GPR68Q15743 365 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 CRB2Q5IJ48 1285 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 ARMC12Q5T9G4 340 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 GLB1LQ6UWU2 654 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 IQCF1Q8N6M8 205 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 PCDH20Q8N6Y1 951 aaKnown RBP4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR4K1Q8NGD4 311 aa4.69□□□□□ -1.66
CSMD3-201ENST00000297405 OR8J1Q8NGP2 316 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms