RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TBC1D3IA0A087WXS9 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3EA0A087X179 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3KA0A087X1G2 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3FA6NER0 549 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3LB9A6J9 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3HP0C7X1 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 RAB4BP61018 213 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3GQ6DHY5 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 GPR139Q6DWJ6 353 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3CQ6IPX1 549 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 C3orf33Q6P1S2 294 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 FAM198BQ6UWH4 519 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D3Q8IZP1 549 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SMARCD2Q92925 531 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 BOLA2-SMG1P6H3BVE0 249 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 OR4F21O95013 312 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 IFNA1P01562 189 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 RGS6P49758 472 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TXNDC5Q8NBS9 432 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 MKKSQ9NPJ1 570 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 COL24A1Q17RW2 1714 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 F5H0A9 414 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SRPRAP08240 638 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CCR8P51685 355 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CNOT11Q9UKZ1 510 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CCDC163A0A0D9SF12 145 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 NT5C1B-RDH14C9J2C7 533 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TOXO94900 526 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CMPK1P30085 196 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SPRED3Q2MJR0 410 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 HSDL2Q6YN16 418 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TBC1D15Q8TC07 691 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 JPH3Q8WXH2 748 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SLC6A7Q99884 636 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 C19orf12Q9NSK7 152 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ST14Q9Y5Y6 855 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ZFP37Q9Y6Q3 630 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 GRM6O15303 877 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CRYZL1O95825 349 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 MAGEA3P43357 314 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CD47Q08722 323 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 KIAA1614Q5VZ46 1190 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 MARVELD2Q8N4S9 558 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 KCT2Q8NC54 265 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ADAMTS10Q9H324 1103 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 FKBPLQ9UIM3 349 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 KCNS2Q9ULS6 477 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 IRS2Q9Y4H2 1338 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 HSPA12AO43301 675 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 PEX10O60683 326 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 FGF19O95750 216 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 MT-ND5P03915 603 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CDH11P55287 796 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 C1QTNF8P60827 252 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 NFKB2Q00653 900 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF252P-AS1Q0IIN9 211 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM236Q5W0B7 351 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TCTEX1D2Q8WW35 142 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 COL21A1Q96P44 957 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 MMP27Q9H306 513 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 P2RX2Q9UBL9 471 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 GTF2IRD1Q9UHL9 959 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SPTA1P02549 2419 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SAP18O00422 153 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TSPAN15O95858 294 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 TMBIM6P55061 237 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 SLC8B1Q6J4K2 584 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 NR2E3Q9Y5X4 410 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 DUSP11O75319 330 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 PABPC4LP0CB38 370 aaKnown RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 DHRS4L1P0CG22 281 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CTBP2P56545 445 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF674Q2M3X9 581 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 LRRC66Q68CR7 880 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 DNM1P34Q6PK57 102 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 BAIAP2L2Q6UXY1 529 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 OR14K1Q8NGZ2 314 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 STK35Q8TDR2 534 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 CANT1Q8WVQ1 401 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 PTPN18Q99952 460 aa9.54□□□□□ -0.88
COL6A3-201ENST00000295550 DPCDQ9BVM2 203 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-201ENST00000295550 IFNA4P05014 189 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 STC1P52823 247 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 TAS2R43P59537 309 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NKX6-1P78426 367 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SLC25A36Q96CQ1 311 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 PSKH2Q96QS6 385 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ARL6Q9H0F7 186 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF726A6NNF4 738 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF35P13682 527 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ENTPD1P49961 510 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ALG10BQ5I7T1 473 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 TSPAN33Q86UF1 283 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SERPINA9Q86WD7 417 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NINJ1Q92982 152 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 PCYT2Q99447 389 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HS3ST4Q9Y661 456 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 KELP23276 732 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SCAPQ12770 1279 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 IKBKEQ14164 716 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms