RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 IL4I1Q96RQ9 567 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 PFDN5Q99471 154 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 TMLHEQ9NVH6 421 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 PPP4R1LQ9P1A2 415 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 SPG11Q96JI7 2443 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 LOC100509620A0A075B734 347 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 GPR89AB7ZAQ6 455 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CAPN5O15484 640 aaPredicted RBP9.03□□□□□ -0.96
CUX1-201ENST00000292535 GPR89BP0CG08 455 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 RAB28P51157 221 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 NOXRED1Q6NXP6 359 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 SLC16A9Q7RTY1 509 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 TM9SF3Q9HD45 589 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 CMAHPQ9Y471 501 aa9.03□□□□□ -0.96
CUX1-201ENST00000292535 AGAP5A6NIR3 686 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 C8BP07358 591 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 UGT1A4P22310 534 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 MAGEA8P43361 318 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 MLIPQ5VWP3 458 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 ZNF783Q6ZMS7 281 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 TMPPEQ6ZT21 453 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 STON2Q8WXE9 905 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 TM9SF4Q92544 642 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 SLC7A11Q9UPY5 501 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 GPR25O00155 361 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 EIF1AYO14602 144 aaKnown RBP9.02□□□□□ -0.96
CUX1-201ENST00000292535 KIAA0895LQ68EN5 471 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 XKRXQ6PP77 449 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 GNPDA2Q8TDQ7 276 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 MR1Q95460 341 aa9.02□□□□□ -0.96
CUX1-201ENST00000292535 ZNF641Q96N77 438 aaPredicted RBP9.02□□□□□ -0.96
CUX1-201ENST00000292535 A0A1W2PPL8 197 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 LRRN3E7EW58 273 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 MBLAC2Q68D91 279 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 BPIFB1Q8TDL5 484 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 TMEM203Q969S6 136 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 SUSD3Q96L08 255 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 LRRN3Q9H3W5 708 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UNKLQ9H9P5 680 aaKnown RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 EI24O14681 340 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UGT1A9O60656 530 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UGT1A6P19224 532 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 OR9A1PQ8NGU1 263 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 WDR77Q9BQA1 342 aaPredicted RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 TTYH2Q9BSA4 534 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UGT1A7Q9HAW7 530 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UGT1A10Q9HAW8 530 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UGT1A8Q9HAW9 530 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 PPP1R14DQ9NXH3 145 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 MIA3Q5JRA6 1907 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GLTPD2A6NH11 291 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 SLC19A2O60779 497 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ACADVLP49748 655 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ACTA2P62736 377 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ACTG2P63267 376 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GALNT11Q8NCW6 608 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 OR4E2Q8NGC2 313 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 TBCCD1Q9NVR7 557 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GJE1A6NN92 205 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ZNF829Q3KNS6 432 aaPredicted RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 SLC22A8Q8TCC7 542 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GCDHQ92947 438 aaPredicted RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 ACSL5Q9ULC5 683 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 FANCMQ8IYD8 2048 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ABCA7Q8IZY2 2146 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GNAO1P09471 354 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 NETO2Q8NC67 525 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 CERS4Q9HA82 394 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 A0A1B0GVT2 93 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 RNF13O43567 381 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 CDK2P24941 298 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ABHD18Q0P651 414 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 DPY19L3Q6ZPD9 716 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 FAM84AQ96KN4 292 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 KLHL21Q9UJP4 597 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 FESP07332 822 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 FAM163BP0C2L3 166 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 VAMP1P23763 118 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ARHGEF28Q8N1W1 1705 aaKnown RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 TRBC2A0A5B9 178 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 M0R2N6 131 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 PROM1O43490 865 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 BRINP1O60477 761 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 PLEKHS1Q5SXH7 462 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 RAET1LQ5VY80 246 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 OR56A3Q8NH54 315 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 NFKBIDQ8NI38 313 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 SCML2Q9UQR0 700 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 SCAMP1O15126 338 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 LRCH4O75427 683 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ACTL6BO94805 426 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 GKN3PP0CG01 181 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 TUBG1P23258 451 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 ASPAP45381 313 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 HSH2DQ96JZ2 352 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 TREX2Q9BQ50 279 aaPredicted RBP9.02□□□□□ -0.97
CUX1-201ENST00000292535 IRF2BPLQ9H1B7 796 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 UCKL1Q9NWZ5 548 aa9.02□□□□□ -0.97
CUX1-201ENST00000292535 AXIN1O15169 862 aa9.01□□□□□ -0.97
CUX1-201ENST00000292535 GSTM2P28161 218 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms