RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 FRA10AC1Q70Z53 315 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 IQCKQ8N0W5 287 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 CNPY4Q8N129 248 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 EFCAB11Q9BUY7 163 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 TMEM109Q9BVC6 243 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 NUDT9Q9BW91 350 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 MS4A8Q9BY19 250 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 VN1R1Q9GZP7 353 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 WWOXQ9NZC7 414 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 XPR1Q9UBH6 696 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 TRPC4Q9UBN4 977 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 PCTPQ9UKL6 214 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 PPT2Q9UMR5 302 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 MAN2B2Q9Y2E5 1009 aa8.64□□□□□ -1.03
HMGN1-201ENST00000288344 MYO18BQ8IUG5 2567 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 BAHCC1Q9P281 2608 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IGHV1-45A0A0A0MS14 117 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 A8MT66 165 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 G3V2L1 256 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 CYR61O00622 381 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 CCNT2O60583 730 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 H2AFYO75367 372 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IGHEP01854 428 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 SLC35G6P0C7Q6 338 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZNF888P0CJ79 500 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 NR1D1P20393 614 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IL10P22301 178 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 OTX2P32243 289 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 CRHR1P34998 444 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 EMP2P54851 167 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IRF8Q02556 426 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 POU4F2Q12837 409 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TRAF3Q13114 568 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 LAPTM5Q13571 262 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 RBBP5Q15291 538 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TSNAXIP1Q2TAA8 658 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 DEFB134Q4QY38 66 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 UNC50Q53HI1 259 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 XKR6Q5GH73 641 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 DEPDC1Q5TB30 811 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 LGSNQ5TDP6 509 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 LIPJQ5W064 366 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 GRHL2Q6ISB3 625 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ALKBH2Q6NS38 261 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 H3F3CQ6NXT2 135 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZNF793Q6ZN11 406 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 GOLGA7Q7Z5G4 137 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 RAB43Q86YS6 212 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 RNF175Q8N4F7 328 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TEX9Q8N6V9 391 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 RBMXL3Q8N7X1 1067 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 PTGR2Q8N8N7 351 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TTLQ8NG68 377 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 OR52B6Q8NGF0 335 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZNF483Q8TF39 744 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZNF775Q96BV0 537 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 MIEF2Q96C03 454 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 NSUN5Q96P11 429 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 OR1F2PQ96R84 312 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZNF700Q9H0M5 742 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 MRPL46Q9H2W6 279 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IPPKQ9H8X2 491 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 PPCSQ9HAB8 311 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 ZBTB20Q9HC78 741 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 C14orf105Q9NVL8 296 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 IRAK4Q9NWZ3 460 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 PSMC3IPQ9P2W1 217 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 GPN3Q9UHW5 284 aaPredicted RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 C3orf18Q9UK00 162 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 FBXL4Q9UKA2 621 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TP53TG5Q9Y2B4 290 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 RNF11Q9Y3C5 154 aa8.63□□□□□ -1.03
HMGN1-201ENST00000288344 TNPO3Q9Y5L0 923 aaKnown RBP8.63□□□□□ -1.03
HMGN1-201ENST00000288344 SHANK1Q9Y566 2161 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 IQANK1A0A1B0GTG1 560 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 SUPT3HB4E1H0 165 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 FAM227AF5H4B4 570 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 TGFBR3LH3BV60 316 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 FOXE1O00358 373 aaPredicted RBP8.62□□□□□ -1.03
HMGN1-201ENST00000288344 PCDH17O14917 1159 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 CLGNO14967 610 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 PRPF4O43172 522 aaKnown RBP eCLIP8.62□□□□□ -1.03
HMGN1-201ENST00000288344 RDH16O75452 317 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 SUPT3HO75486 399 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 ETHE1O95571 254 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 GSTA1P08263 222 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 SNRPBP14678 240 aaKnown RBP8.62□□□□□ -1.03
HMGN1-201ENST00000288344 EPB42P16452 691 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 IMPDH1P20839 514 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 HNF4AP41235 474 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 PIK3CBP42338 1070 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 XCR1P46094 333 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 AVPR1BP47901 424 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 CCL11P51671 97 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 GPR143P51810 404 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 HNRNPFP52597 415 aaKnown RBP8.62□□□□□ -1.03
HMGN1-201ENST00000288344 ARFIP1P53367 373 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 PRKAA2P54646 552 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 RAB8AP61006 207 aa8.62□□□□□ -1.03
HMGN1-201ENST00000288344 OCA2Q04671 838 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms