RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OR4C15Q8NGM1 316 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 ZNF480Q8WV37 535 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 LRRC3BQ96PB8 259 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 DCLRE1CQ96SD1 692 aaKnown RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 PITX2Q99697 317 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 GPA33Q99795 319 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 ACER3Q9NUN7 267 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 DNAJC27Q9NZQ0 273 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 PRAMEF27A3QJZ7 478 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 WASH3PC4AMC7 463 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 KPNA4O00629 521 aaPredicted RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 NUAK1O60285 661 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 UPK1BO75841 260 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 C9P02748 559 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 CLEC2LP0C7M8 214 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SERPINA4P29622 427 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 COMMD6Q7Z4G1 85 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SLC43A3Q8NBI5 491 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 DACH2Q96NX9 599 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SH3GL1Q99961 368 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 ITPAQ9BY32 194 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 RAB23Q9ULC3 237 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 AGAP5A6NIR3 686 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 H3BQ06 376 aaPredicted RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 PRPS1L1P21108 318 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 PSMB5P28074 263 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 CNR2P34972 360 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 BAK1Q16611 211 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TSTQ16762 297 aaKnown RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 TPRG1LQ5T0D9 272 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 RETSATQ6NUM9 610 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SLC46A3Q7Z3Q1 461 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 VN1R5Q7Z5H4 357 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TECPR1Q7Z6L1 1165 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TERB1Q8NA31 727 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 OR8J2Q8NGG1 315 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 PHF10Q8WUB8 498 aaKnown RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 SLC38A4Q969I6 547 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 CEP295NLQ96MC4 621 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 ZSWIM3Q96MP5 696 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 QRSL1Q9H0R6 528 aaKnown RBP10.24□□□□□ -0.77
USP28-201ENST00000003302 TBC1D14Q9P2M4 693 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TBC1D24Q9ULP9 559 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 IFT52Q9Y366 437 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SUV39H1O43463 412 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TGM5O43548 720 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 LATO43561 262 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TNFRSF21O75509 655 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 CD72P21854 359 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 HNF4AP41235 474 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SERPINB10P48595 397 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 RGS6P49758 472 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 DGUOKQ16854 277 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 NPAS3Q8IXF0 933 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 DMRTB1Q96MA1 342 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 FAM129BQ96TA1 746 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SLC29A3Q9BZD2 475 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 RMND5AQ9H871 391 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 SYNPO2LQ9H987 977 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 PALMDQ9NP74 551 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 CARD8Q9Y2G2 431 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 TPRKBQ9Y3C4 175 aa10.24□□□□□ -0.77
USP28-201ENST00000003302 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 ARHGAP33O14559 1287 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 NARSO43776 548 aaKnown RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 KIAA0513O60268 411 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 CNOT3O75175 753 aaKnown RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 KLK1P06870 262 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 HIST1H2AGP0C0S8 130 aaPredicted RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 PRPS2P11908 318 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 HIST1H2ADP20671 130 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 PPP5CP53041 499 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 TAS2R50P59544 299 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 CPTPQ5TA50 214 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 SHFQ7M4L6 423 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 ADIPOR2Q86V24 386 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 GATAD2AQ86YP4 633 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 TMC8Q8IU68 726 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 NLGN4YQ8NFZ3 816 aaPredicted RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP28-201ENST00000003302 HIST1H2AHQ96KK5 128 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 MCCC1Q96RQ3 725 aaPredicted RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 HIST1H2AJQ99878 128 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 SLC35A5Q9BS91 424 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 H2AFJQ9BTM1 129 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 LOC400499M0QZD8 3231 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 LEFTY2O00292 366 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 CCL16O15467 120 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 OLFM2O95897 454 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 CDK1P06493 297 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 GGT2P36268 569 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 RPS19P39019 145 aaKnown RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 SELENOWP63302 87 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 ILF2Q12905 390 aaKnown RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 STARD3Q14849 445 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 TAB1Q15750 504 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 BCL7AQ4VC05 210 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 CCBE1Q6UXH8 406 aaPredicted RBP10.23□□□□□ -0.77
USP28-201ENST00000003302 NRARPQ7Z6K4 114 aa10.23□□□□□ -0.77
USP28-201ENST00000003302 P3H2Q8IVL5 708 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms