RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ITGB1BP2Q9UKP3 347 aa15.13■□□□□ 0.01
CLN3-246ENST00000636228 CHMP2BQ9UQN3 213 aa15.13■□□□□ 0.01
CLN3-246ENST00000636228 CDC7O00311 574 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 MLYCDO95822 493 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 ABOP16442 354 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 PTGER1P34995 402 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 ELK3P41970 407 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 AP1S2P56377 157 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 MLF1P58340 268 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 KIAA0408Q6ZU52 694 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 ABHD13Q7L211 337 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 DOLPP1Q86YN1 238 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 TBC1D19Q8N5T2 526 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 FAM98AQ8NCA5 519 aaKnown RBP15.12■□□□□ 0.01
CLN3-246ENST00000636228 NFAM1Q8NET5 270 aaPredicted RBP15.12■□□□□ 0.01
CLN3-246ENST00000636228 GABPB2Q8TAK5 448 aaPredicted RBP15.12■□□□□ 0.01
CLN3-246ENST00000636228 MTFMTQ96DP5 389 aaKnown RBP15.12■□□□□ 0.01
CLN3-246ENST00000636228 WDR83Q9BRX9 315 aaKnown RBP15.12■□□□□ 0.01
CLN3-246ENST00000636228 ZFATQ9P243 1243 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 SLC22A14Q9Y267 594 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 DYRK1BQ9Y463 629 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 CSMD2Q7Z408 3487 aa15.12■□□□□ 0.01
CLN3-246ENST00000636228 A0A0G2JN53 185 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 GOLGA6L10A0A0M3HER8 536 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 SAGE2PA6NJ88 616 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 NME2P1O60361 137 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 CLDN14O95500 239 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 ZNF24P17028 368 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 NME2P22392 152 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 CYB561P49447 251 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 KRTAP10-9P60411 292 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 REEP5Q00765 189 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 ZNF460Q14592 562 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 C18orf21Q32NC0 220 aaPredicted RBP15.11■□□□□ 0.01
CLN3-246ENST00000636228 TOR1AIP1Q5JTV8 583 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 SBSNQ6UWP8 590 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 QSOX2Q6ZRP7 698 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 STRA8Q7Z7C7 330 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 TMPRSS11BQ86T26 416 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 LGI4Q8N135 537 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 CA13Q8N1Q1 262 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 GHDCQ8N2G8 530 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 ATL1Q8WXF7 558 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 DEFB126Q9BYW3 111 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 SLC6A16Q9GZN6 736 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 ASB1Q9Y576 335 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 OTOGQ6ZRI0 2925 aa15.11■□□□□ 0.01
CLN3-246ENST00000636228 PDZD2O15018 2839 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 TCRBV16S1A1N1A0A5B0 115 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 NPEPPSL1A6NEC2 478 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 PSMD12O00232 456 aaPredicted RBP15.1■□□□□ 0.01
CLN3-246ENST00000636228 ADAM10O14672 748 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 SMIM10L1P0DMW3 83 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 AGAP20933 346 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 IVDP26440 423 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 AHRP35869 848 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 MEOX1P50221 254 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 HLCSP50747 726 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 BTN3A2P78410 334 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 PPP1R3AQ16821 1122 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 FAM45BPQ6NSW5 357 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 NXPE4Q6UWF7 544 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 ANKMY2Q8IV38 441 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 SULF2Q8IWU5 870 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 TRPV3Q8NET8 790 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 FAM45AQ8TCE6 357 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 CREB3L4Q8TEY5 395 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 SREK1Q8WXA9 508 aaKnown RBP15.1■□□□□ 0.01
CLN3-246ENST00000636228 SMIM10Q96HG1 83 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 NAT9Q9BTE0 207 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 PELI2Q9HAT8 420 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 GPAMQ9HCL2 828 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 PRDM9Q9NQV7 894 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 PSAT1Q9Y617 370 aa15.1■□□□□ 0.01
CLN3-246ENST00000636228 IGKV3D-11A0A0A0MRZ8 115 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 TRBV11-1A0A0K0K1C0 115 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 MYO1DO94832 1006 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 ENO2P09104 434 aaPredicted RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 RNH1P13489 461 aaKnown RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 PPP2R1BP30154 601 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 TRHRP34981 398 aaPredicted RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 GDF5P43026 501 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 NR0B1P51843 470 aaKnown RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 SKP1P63208 163 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 RUNX2Q13950 521 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 C16orf47Q6ZP98 133 aaPredicted RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 MDGA2Q7Z553 956 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 GALNT7Q86SF2 657 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 TMEM125Q96AQ2 219 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 EGFL8Q99944 293 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 AIF1LQ9BQI0 150 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 TRIM45Q9H8W5 580 aaPredicted RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 LIN28AQ9H9Z2 209 aaKnown RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 PNO1Q9NRX1 252 aaKnown RBP15.09■□□□□ 0.01
CLN3-246ENST00000636228 FBXW2Q9UKT8 454 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 SNX12Q9UMY4 172 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 HRH3Q9Y5N1 445 aa15.09■□□□□ 0.01
CLN3-246ENST00000636228 A0A1B0GTH9 108 aa15.08■□□□□ 0
CLN3-246ENST00000636228 MYOCOSA0A1B0GUC4 107 aa15.08■□□□□ 0
CLN3-246ENST00000636228 TGFBR3LH3BV60 316 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms