RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 TTC29Q8NA56 475 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 BRIX1Q8TDN6 353 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SLC25A23Q9BV35 468 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 PARD6BQ9BYG5 372 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SLC6A16Q9GZN6 736 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF395Q9H8N7 513 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 DNAJC11Q9NVH1 559 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 GPR83Q9NYM4 423 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 GPN3Q9UHW5 284 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZFP69BQ9UJL9 534 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 KCNE2Q9Y6J6 123 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 NAV2Q8IVL1 2488 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 DNAJC13O75165 2243 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 KCNE1BA0A087WTH5 132 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 A0A087WUV0 522 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 A8MT66 165 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 NDC80O14777 642 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF500O60304 480 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 KDM1AO60341 852 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 DLX3O60479 287 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF354AO60765 605 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SPAG7O75391 227 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 EEDO75530 441 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 RAB40ALP0C0E4 278 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SERPINB3P29508 390 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 GGT5P36269 586 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 RPS15AP62244 130 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ABATP80404 500 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 DSG2Q14126 1118 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 PCOLCEQ15113 449 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 C18orf63Q68DL7 685 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF605Q86T29 641 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 BPHLQ86WA6 291 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 KLHDC8AQ8IYD2 350 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 GALNT16Q8N428 558 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 HUS1BQ8NHY5 278 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 C9orf43Q8TAL5 461 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 STAG3L4Q8TBR4 150 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 THOC3Q96J01 351 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ZNF717Q9BY31 904 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 TRIM54Q9BYV2 358 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 IPPKQ9H8X2 491 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ANKRA2Q9H9E1 313 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 POPDC3Q9HBV1 291 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SRPK3Q9UPE1 567 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 LRBAP50851 2863 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ITPR2Q14571 2701 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 TRBC2A0A5B9 178 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 CCDC189A1A4V9 331 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 EIF4E1BA6NMX2 242 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 A8MUI8 341 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SMIM10L1P0DMW3 83 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 GNAZP19086 355 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 ARL1P40616 181 aaPredicted RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 EMP2P54851 167 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 PMP22Q01453 160 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 IRF8Q02556 426 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 MRPL49Q13405 166 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SETDB1Q15047 1291 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 FAM214AQ32MH5 1076 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 AFAP1L2Q8N4X5 818 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 OR7G3Q8NG95 312 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 PROKR1Q8TCW9 393 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 TRPC4APQ8TEL6 797 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 PPWD1Q96BP3 646 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SMIM10Q96HG1 83 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 MAPKAP1Q9BPZ7 522 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 MRPL1Q9BYD6 325 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 MLXIPLQ9NP71 852 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 SLC17A7Q9P2U7 560 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 NOVA2Q9UNW9 492 aaKnown RBP5.37□□□□□ -1.55
CPNE3-208ENST00000614678 DYRK1BQ9Y463 629 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 MAP4K5Q9Y4K4 846 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 TIMM22Q9Y584 194 aa5.37□□□□□ -1.55
CPNE3-208ENST00000614678 NINQ8N4C6 2090 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 FBN2P35556 2912 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 IGLV3-12A0A075B6K2 115 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 IGHV1-45A0A0A0MS14 117 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ENO2P09104 434 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ALOX12P18054 663 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 SERPINB8P50452 374 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 ARSFP54793 590 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 RPS13P62277 151 aaKnown RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 RHAGQ02094 409 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 GTF2H2Q13888 395 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 GTF2H2CQ6P1K8 395 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CA13Q8N1Q1 262 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PHACTR1Q9C0D0 580 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PRDM7Q9NQW5 492 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NSMCE4AQ9NXX6 385 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PCTPQ9UKL6 214 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 FBXW2Q9UKT8 454 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NOTCH2Q04721 2471 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 NUP214P35658 2090 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 KIF2AO00139 706 aaPredicted RBP5.36□□□□□ -1.55
CPNE3-208ENST00000614678 PLPP1O14494 284 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 TMPRSS11DO60235 418 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 GSTA2P09210 222 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 CRABP2P29373 138 aa5.36□□□□□ -1.55
CPNE3-208ENST00000614678 HSD17B2P37059 387 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms