RNA–Protein interactions for RNA: ENST00000614526.1

LIG4-205, Transcript of DNA ligase 4, humanhuman

TSL 2 BASIC

Gene LIG4, Length 3,884 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-205ENST00000614526 TIMM29Q9BSF4 260 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 YIPF4Q9BSR8 244 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 RHBGQ9H310 441 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 VCX3BQ9H321 246 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 REEP4Q9H6H4 257 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 BRF2Q9HAW0 419 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLC6A20Q9NP91 592 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PCDHB3Q9Y5E6 796 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SPAG17Q6Q759 2223 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 C15orf38-AP3S2A0A0A6YYH1 394 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 A0A1W2PRB8 838 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 AQP12BA6NM10 295 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CASQ2O14958 399 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 CASC3O15234 703 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 DNAJB6O75190 326 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 E2F6O75461 281 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 LDLRP01130 860 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 VIPP01282 170 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 LYNP07948 512 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 MYF5P13349 255 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CHI3L1P36222 383 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 FEN1P39748 380 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 OR1E2P47887 323 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 MANFP55145 182 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 ILF3Q12906 894 aaKnown RBP eCLIP3.28□□□□□ -1.88
LIG4-205ENST00000614526 AGERQ15109 404 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 DEFB110Q30KQ9 67 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 FBXO43Q4G163 708 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TJAP1Q5JTD0 557 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TMTC4Q5T4D3 741 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 RNF220Q5VTB9 566 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ARPINQ7Z6K5 226 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 RNF130Q86XS8 419 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 OR4N5Q8IXE1 308 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 AQP12AQ8IXF9 295 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 METTL4Q8N3J2 472 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 OR2L3Q8NG85 312 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 OR8J3Q8NGG0 315 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 COL26A1Q96A83 441 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TESCQ96BS2 214 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 C11orf24Q96F05 449 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLC47A1Q96FL8 570 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TEFMQ96QE5 360 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLC35A5Q9BS91 424 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 AICDAQ9GZX7 198 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SMURF2Q9HAU4 748 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLAMF7Q9NQ25 335 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ASIC5Q9NY37 505 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 KLHL3Q9UH77 587 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 MAGEL2Q9UJ55 1249 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PCDHB11Q9Y5F2 797 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 DNMT3AQ9Y6K1 912 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 ASXL3Q9C0F0 2248 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TRBV5-3A0A0A0MS03 114 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 FOXE1O00358 373 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 PGRMC2O15173 223 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ZW10O43264 779 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 HNRNPRO43390 633 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 KCNK5O95279 499 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SNAP29O95721 258 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CST1P01037 141 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 NPPAP01160 153 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CTSBP07858 339 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CHRM5P08912 532 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 FURINP09958 794 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PRPH2P23942 346 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 CERS1P27544 350 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PKLRP30613 574 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 GRK3P35626 688 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ASMTP46597 345 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 MRPL19P49406 292 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 PRIM2P49643 509 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 BTN3A2P78410 334 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PHEXP78562 749 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ID2Q02363 134 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SFSWAPQ12872 951 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 SRSF5Q13243 272 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLAMF1Q13291 335 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 BIRC2Q13490 618 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 TP53BP2Q13625 1128 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SLC5A12Q1EHB4 618 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SMU1Q2TAY7 513 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 LRIT3Q3SXY7 679 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 FAM98BQ52LJ0 330 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 TOR1AIP1Q5JTV8 583 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 C18orf63Q68DL7 685 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 GPR153Q6NV75 609 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SPESP1Q6UW49 350 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ZNF793Q6ZN11 406 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 WDR53Q7Z5U6 358 aaPredicted RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 UBE3DQ7Z6J8 389 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PROSER1Q86XN7 944 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 PTRH1Q86Y79 214 aaKnown RBP3.28□□□□□ -1.88
LIG4-205ENST00000614526 NRROSQ86YC3 692 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 KLHDC8AQ8IYD2 350 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 SMYD1Q8NB12 490 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 ADCY4Q8NFM4 1077 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 DNASE1L2Q92874 299 aa3.28□□□□□ -1.88
LIG4-205ENST00000614526 UBE2E3Q969T4 207 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms