RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SNX6Q9UNH7 406 aa18.35■□□□□ 0.53
UPF1-209ENST00000600310 SRRM3A6NNA2 597 aaPredicted RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 MAGEB17A8MXT2 336 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 HMGB1P1B2RPK0 211 aaPredicted RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 EFSO43281 561 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 GALR3O60755 368 aaPredicted RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 WT1P19544 449 aaPredicted RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 FBLP22087 321 aaKnown RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 PTPN4P29074 926 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 SERPINB5P36952 375 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 NEK2P51955 445 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 RAB8AP61006 207 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 RPS13P62277 151 aaKnown RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 SKP1P63208 163 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 IFT88Q13099 833 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 SLC9A5Q14940 896 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 DEFB134Q4QY38 66 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 TMEM35AQ53FP2 167 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 DEPDC1Q5TB30 811 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 CHSY3Q70JA7 882 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 RNF175Q8N4F7 328 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 SLC45A3Q96JT2 553 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 F2RL3Q96RI0 385 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 SLC26A1Q9H2B4 701 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 ELOVL6Q9H5J4 265 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 PRM3Q9NNZ6 103 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 GPN3Q9UHW5 284 aaPredicted RBP18.34■□□□□ 0.53
UPF1-209ENST00000600310 NAALAD2Q9Y3Q0 740 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 WDFY3Q8IZQ1 3526 aa18.34■□□□□ 0.53
UPF1-209ENST00000600310 IGLV3-12A0A075B6K2 115 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 WDR91A4D1P6 747 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 C4orf51C9J302 202 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 SGK494L7N484 410 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 ERI3O43414 337 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 KRT6AP02538 564 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 KRT6BP04259 564 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 ATXN8OSP0DMR3 200 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 PTX3P26022 381 aaPredicted RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 KRT6CP48668 564 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 WDR4P57081 412 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 TGM3Q08188 693 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 GALNT1Q10472 559 aaPredicted RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 HHATQ5VTY9 493 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 KHDRBS2Q5VWX1 349 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 TRIM40Q6P9F5 258 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 ABHD17CQ6PCB6 329 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 ZCCHC23Q6ZST2 131 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 ENDOVQ8N8Q3 282 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 SRFBP1Q8NEF9 429 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 METTL6Q8TCB7 284 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 SELENOMQ8WWX9 145 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 MTFMTQ96DP5 389 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 OR51B5Q9H339 312 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 CLK4Q9HAZ1 481 aaKnown RBP18.33■□□□□ 0.52
UPF1-209ENST00000600310 MLXIPLQ9NP71 852 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 NKIRAS1Q9NYS0 192 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 PADI2Q9Y2J8 665 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 MAP4K5Q9Y4K4 846 aa18.33■□□□□ 0.52
UPF1-209ENST00000600310 VSTM2BA6NLU5 285 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 MANBAO00462 879 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 CNOT3O75175 753 aaKnown RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 KLF7O75840 302 aaPredicted RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 B3GALT4O96024 378 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 HMOX2P30519 316 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 PLA2G16P53816 162 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 UCNP55089 124 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 BTN3A2P78410 334 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 MAT1AQ00266 395 aaKnown RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 ZNF33BQ06732 778 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 CUL3Q13618 768 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 RCN2Q14257 317 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 NKG7Q16617 165 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 SGO1Q5FBB7 561 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 ARL13AQ5H913 290 aaPredicted RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 UBE3DQ7Z6J8 389 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 QRFPRQ96P65 431 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 ACTL8Q9H568 366 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 WDR54Q9H977 334 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 MKKSQ9NPJ1 570 aaPredicted RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 PRDM7Q9NQW5 492 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 TRPC4Q9UBN4 977 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 CTSFQ9UBX1 484 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 ZNF282Q9UDV7 671 aaPredicted RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 NXT1Q9UKK6 140 aaKnown RBP18.32■□□□□ 0.52
UPF1-209ENST00000600310 TCFL5Q9UL49 500 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 TIMM22Q9Y584 194 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 IGF2RP11717 2491 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 FER1L5A0AVI2 2057 aa18.32■□□□□ 0.52
UPF1-209ENST00000600310 A0A088AWK7 358 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 ZNF860A6NHJ4 632 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 RDH16O75452 317 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 RECKO95980 971 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 PDYNP01213 254 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 SERPINE1P05121 402 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 CHRNGP07510 517 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 ZNF10P21506 573 aaPredicted RBP18.31■□□□□ 0.52
UPF1-209ENST00000600310 ARFIP1P53367 373 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 FOXA1P55317 472 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 CHI3L2Q15782 390 aa18.31■□□□□ 0.52
UPF1-209ENST00000600310 SYT16Q17RD7 645 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms