RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 H3BQ06 376 aaPredicted RBP13.83□□□□□ -0.2
VRK3-217ENST00000599538 OR1F1O43749 312 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 IL1RNP18510 177 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 BSGP35613 385 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 MAGEA2P43356 314 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 CCR8P51685 355 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 PPP2R2BQ00005 443 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 REEP5Q00765 189 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 CCNYL2Q5T2Q4 361 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 TTC33Q6PID6 262 aaPredicted RBP13.83□□□□□ -0.2
VRK3-217ENST00000599538 OR52E1Q8NGJ3 308 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 TMIGD2Q96BF3 282 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 CXorf40BQ96DE9 158 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 OSBPL10Q9BXB5 764 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 TOR3AQ9H497 397 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 SAMD4AQ9UPU9 718 aaKnown RBP13.83□□□□□ -0.2
VRK3-217ENST00000599538 ICKQ9UPZ9 632 aa13.83□□□□□ -0.2
VRK3-217ENST00000599538 GPR37L1O60883 481 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 SEMG1P04279 462 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 THRBP10828 461 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 CD72P21854 359 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 AK4P27144 223 aaPredicted RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 SHMT2P34897 504 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PIGAP37287 484 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 YAP1P46937 504 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 PHEXP78562 749 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 RBM44Q6ZP01 1051 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 ADCK2Q7Z695 626 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 UBE3DQ7Z6J8 389 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PGBD3Q8N328 593 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 GOT1L1Q8NHS2 421 aaPredicted RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 CCL4L1Q8NHW4 92 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 TSC22D3Q99576 134 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 SLC35A5Q9BS91 424 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 AMBRA1Q9C0C7 1298 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 ZNF576Q9H609 170 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 SYNPO2LQ9H987 977 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 CLK4Q9HAZ1 481 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 SLAMF7Q9NQ25 335 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 SPHK1Q9NYA1 384 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 THEGQ9P2T0 379 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 ZNF282Q9UDV7 671 aaPredicted RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 COL4A2P08572 1712 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 KNL1Q8NG31 2342 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PRSS38A1L453 326 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 ENO4A6NNW6 628 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 VILLO15195 856 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 TMPRSS11DO60235 418 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 ALBP02768 609 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 NDUFV2P19404 249 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PKLRP30613 574 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 POLR2IP36954 125 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 HSD17B2P37059 387 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 CRATP43155 626 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 RAB28P51157 221 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PRDX1Q06830 199 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 SLC5A12Q1EHB4 618 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 UAP1L1Q3KQV9 507 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.82□□□□□ -0.2
VRK3-217ENST00000599538 KIAA1324Q6UXG2 1013 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 CBLL1Q75N03 491 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 CEP68Q76N32 757 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 RD3Q7Z3Z2 195 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PATL1Q86TB9 770 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.82□□□□□ -0.2
VRK3-217ENST00000599538 EID3Q8N140 333 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 RPLP0P6Q8NHW5 317 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 ZFP28Q8NHY6 868 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 OR1E3Q8WZA6 343 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 TM4SF18Q96CE8 201 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 HSH2DQ96JZ2 352 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 MBOAT4Q96T53 435 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 RBM38Q9H0Z9 239 aaKnown RBP13.82□□□□□ -0.2
VRK3-217ENST00000599538 CD320Q9NPF0 282 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 IL1RAPQ9NPH3 570 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 TBC1D29Q9UFV1 150 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 PADI4Q9UM07 663 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 MAPRE3Q9UPY8 281 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 KLHL20Q9Y2M5 609 aa13.82□□□□□ -0.2
VRK3-217ENST00000599538 SHISA7A6NL88 538 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 WASHC1A8K0Z3 465 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 CACNB4O00305 520 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 E2F6O75461 281 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 OPN1SWP03999 348 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 PEBP1P30086 187 aaKnown RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 CLCN2P51788 898 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 KRT33BQ14525 404 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 RPE65Q16518 533 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 ERICH5Q6P6B1 374 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 WASH2PQ6VEQ5 465 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 R3HCC1LQ7Z5L2 792 aaKnown RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 ADHFE1Q8IWW8 467 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 FBXL6Q8N531 539 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 TPD52L3Q96J77 140 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 PREBQ9HCU5 417 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 MIEF1Q9NQG6 463 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 ATAD3AQ9NVI7 634 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 FAF1Q9UNN5 650 aaPredicted RBP13.81□□□□□ -0.2
VRK3-217ENST00000599538 SNX11Q9Y5W9 270 aa13.81□□□□□ -0.2
VRK3-217ENST00000599538 GMEB1Q9Y692 573 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms