RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 A0A088AWK7 358 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 NCF1BA6NI72 391 aaPredicted RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 SAGE2PA6NJ88 616 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 ENO4A6NNW6 628 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 NCF1CA8MVU1 366 aaPredicted RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 E7ESA3 106 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 CDK2AP1O14519 115 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 FCHO1O14526 889 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 MAN1A2O60476 641 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 SLC19A2O60779 497 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 DNAJB6O75190 326 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 NCF1P14598 390 aaPredicted RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 MAOAP21397 527 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 ZNF10P21506 573 aaPredicted RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 GSTM2P28161 218 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 HPDP32754 393 aaPredicted RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 CYB561P49447 251 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 ST13P50502 369 aaKnown RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 TAS2R39P59534 338 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 BTG2P78543 158 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 CALCOCO2Q13137 446 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 KRTCAP3Q53RY4 240 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 RPTNQ6XPR3 784 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 GALNTL5Q7Z4T8 443 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 RPS19BP1Q86WX3 136 aaKnown RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.19□□□□□ -0.94
VRK3-216ENST00000599342 KRT78Q8N1N4 520 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 TCAIMQ8N3R3 496 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 KIF2BQ8N4N8 673 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 ELP5Q8TE02 316 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 PYROXD1Q8WU10 500 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 GAL3ST3Q96A11 431 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 MARVELD3Q96A59 401 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 TMEM125Q96AQ2 219 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 TSPAN17Q96FV3 270 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 CCDC120Q96HB5 630 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 GPR137Q96N19 417 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 FRMD6Q96NE9 622 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 KRT12Q99456 494 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 NPAS2Q99743 824 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 CAPS2Q9BXY5 557 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 HES7Q9BYE0 225 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 RUBCNLQ9H714 662 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 CNOT10Q9H9A5 744 aaKnown RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 WWOXQ9NZC7 414 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 SNX24Q9Y343 169 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 SCN3AQ9NY46 2000 aa9.19□□□□□ -0.94
VRK3-216ENST00000599342 SPTAN1Q13813 2472 aaKnown RBP9.19□□□□□ -0.94
VRK3-216ENST00000599342 TCRBV16S1A1N1A0A5B0 115 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 CTAGE15A4D2H0 777 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ASPDHA6ND91 283 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ANKDD1BA6NHY2 528 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 A8MUA0 341 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 NPIPA5E9PKD4 350 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ERI3O43414 337 aaKnown RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 SLC25A12O75746 678 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 NEURL1O76050 574 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 SP1P08047 785 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 C1GALT1C1LP0DN25 315 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ESRRAP11474 423 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 TPP2P29144 1249 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 GDF5P43026 501 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 RPL21P46778 160 aaKnown RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 BTN3A2P78410 334 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 POU4F1Q01851 419 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 HYAL2Q12891 473 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ART3Q13508 389 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 SLBPQ14493 270 aaKnown RBP eCLIP9.18□□□□□ -0.94
VRK3-216ENST00000599342 TGFBIQ15582 683 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 MAPKAPK3Q16644 382 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 SP5Q6BEB4 398 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 SLC25A25Q6KCM7 469 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 TMIGD1Q6UXZ0 262 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 MRGPRGQ86SM5 289 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 CTAGE6Q86UF2 777 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 TICAM1Q8IUC6 712 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 CEP97Q8IW35 865 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 CA13Q8N1Q1 262 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ZNF808Q8N4W9 903 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 ADAMTS18Q8TE60 1221 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 CREB3L4Q8TEY5 395 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 THAP3Q8WTV1 239 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 ANKRD49Q8WVL7 239 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 ITLN2Q8WWU7 325 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 RHBDF1Q96CC6 855 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 SEC16BQ96JE7 1060 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 DEFB126Q9BYW3 111 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 UNKQ9C0B0 810 aaKnown RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 DERL2Q9GZP9 239 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 TSPAN10Q9H1Z9 355 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 KLHL31Q9H511 634 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 COPS7BQ9H9Q2 264 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 PRM3Q9NNZ6 103 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 GPRC5BQ9NZH0 403 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 NPIPA1Q9UND3 350 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 MMACHCQ9Y4U1 282 aa9.18□□□□□ -0.94
VRK3-216ENST00000599342 KLF2Q9Y5W3 355 aaPredicted RBP9.18□□□□□ -0.94
VRK3-216ENST00000599342 IGKV3D-11A0A0A0MRZ8 115 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 A0A0G2JN53 185 aa9.17□□□□□ -0.94
VRK3-216ENST00000599342 TRBV11-1A0A0K0K1C0 115 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms