RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 ZNF740Q8NDX6 193 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 OR7G3Q8NG95 312 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 OR4D9Q8NGE8 314 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 N4BP2L2Q92802 583 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 RERGQ96A58 199 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 THAP11Q96EK4 314 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 TCTN2Q96GX1 697 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 POM121Q96HA1 1249 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 SEC16BQ96JE7 1060 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 PPM1MQ96MI6 270 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 TRAPPC9Q96Q05 1148 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 ZFYVE21Q9BQ24 234 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 NUF2Q9BZD4 464 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 SPNS1Q9H2V7 528 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 PDE7BQ9NP56 450 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 ZNF71Q9NQZ8 489 aaPredicted RBP11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 KLHL14Q9P2G3 628 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 DCTN4Q9UJW0 460 aa11.5□□□□□ -0.57
SHKBP1-213ENST00000597325 A0A1W2PQM1 296 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 D6RAR5 112 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 SLC28A1O00337 649 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 NTN3O00634 580 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 NDUFAB1O14561 156 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 TOX3O15405 576 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 RGS14O43566 566 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 KIF1CO43896 1103 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 VPS4BO75351 444 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 FAM107AO95990 144 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 PDYNP01213 254 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 SERPIND1P05546 499 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 LINC00032P0C843 101 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 HSD3B1P14060 373 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 ALOX15P16050 662 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 HSD3B2P26439 372 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 AHRP35869 848 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 BCL6P41182 706 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 PIK3CBP42338 1070 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 SCTRP47872 440 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 HTR6P50406 440 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MLLT10P55197 1068 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 RELAQ04206 551 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 CSTF3Q12996 717 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 EIF3IQ13347 325 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 ABRAXAS2Q15018 415 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 UGT3A2Q3SY77 523 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 ZC3H12BQ5HYM0 836 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 TMTC4Q5T4D3 741 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 GKAP1Q5VSY0 366 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 FCRL6Q6DN72 434 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 RNF44Q7L0R7 432 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 KMT5CQ86Y97 462 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 PLD3Q8IV08 490 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 ZNF655Q8N720 491 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 GBP7Q8N8V2 638 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MFSD9Q8NBP5 474 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 RFWD2Q8NHY2 731 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 HUS1BQ8NHY5 278 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 C9orf43Q8TAL5 461 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 USP7Q93009 1102 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MTFMTQ96DP5 389 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 PPP1R36Q96LQ0 422 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 CCT8L2Q96SF2 557 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 HBEGFQ99075 208 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MTERF1Q99551 399 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 ELAC2Q9BQ52 826 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MEAF6Q9HAF1 191 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 DMRT3Q9NQL9 472 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 FARSBQ9NSD9 589 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 NMRK1Q9NWW6 199 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 PSD3Q9NYI0 1048 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 TMEM9Q9P0T7 183 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 TSC22D4Q9Y3Q8 395 aa11.49□□□□□ -0.57
SHKBP1-213ENST00000597325 MED13LQ71F56 2210 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 IGHV5-51A0A0C4DH38 117 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 A0A0J9YVX5 310 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 FOXE1O00358 373 aaPredicted RBP11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 NDUFS4O43181 175 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 NRP2O60462 931 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 JUNP05412 331 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 ANKRD34CP0C6C1 535 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 SLC35G6P0C7Q6 338 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 THRAP10827 490 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 GNLYP22749 145 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 NEK2P51955 445 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 ARFIP2P53365 341 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 HSD11B2P80365 405 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 RGS1Q08116 209 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 SF3A3Q12874 501 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 NR6A1Q15406 480 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 PHF19Q5T6S3 580 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 NXNQ6DKJ4 435 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 CGB2Q6NT52 195 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 SCIMPQ6UWF3 145 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 RAB11FIP2Q7L804 512 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 B3GNT8Q7Z7M8 397 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 TRPV3Q8NET8 790 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 WDR20Q8TBZ3 569 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 BCAS4Q8TDM0 211 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 TUBGCP3Q96CW5 907 aa11.48□□□□□ -0.57
SHKBP1-213ENST00000597325 CCDC74BQ96LY2 380 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms