RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 EXT2Q93063 718 aa12.27□□□□□ -0.45
LIG1-212ENST00000596549 GAL3ST3Q96A11 431 aa12.27□□□□□ -0.45
LIG1-212ENST00000596549 TBC1D20Q96BZ9 403 aa12.27□□□□□ -0.45
LIG1-212ENST00000596549 AGPAT4Q9NRZ5 378 aa12.27□□□□□ -0.45
LIG1-212ENST00000596549 GPRC5BQ9NZH0 403 aa12.27□□□□□ -0.45
LIG1-212ENST00000596549 ZGRF1Q86YA3 2104 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ICE1Q9Y2F5 2266 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 IGKV3D-11A0A0A0MRZ8 115 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 TRAV17A0A0B4J275 112 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 A0A0G2JN53 185 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 OR5H15A6NDH6 313 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 LDLRP01130 860 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 SERPINA6P08185 405 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ICAM2P13598 275 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 JAK1P23458 1154 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 KCNC1P48547 511 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ST13P50502 369 aaKnown RBP12.26□□□□□ -0.45
LIG1-212ENST00000596549 SLC26A5P58743 744 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ATP6V0D1P61421 351 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 AP2B1P63010 937 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 BTG2P78543 158 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 CKAP4Q07065 602 aaKnown RBP12.26□□□□□ -0.45
LIG1-212ENST00000596549 NSDHLQ15738 373 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 INAQ16352 499 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 GRTP1Q5TC63 336 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ABHD17BQ5VST6 288 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 NIPAL1Q6NVV3 410 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 FAM180AQ6UWF9 173 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 TMIGD1Q6UXZ0 262 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 QSOX2Q6ZRP7 698 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 GPSM1Q86YR5 675 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 CRLF3Q8IUI8 442 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 BEST3Q8N1M1 668 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 CA13Q8N1Q1 262 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 TCAIMQ8N3R3 496 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 KIAA1191Q96A73 305 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 MS4A6EQ96DS6 147 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 WDR34Q96EX3 536 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 ATOH8Q96SQ7 321 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 LRRC1Q9BTT6 524 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 MMP25Q9NPA2 562 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 DNAJC11Q9NVH1 559 aa12.26□□□□□ -0.45
LIG1-212ENST00000596549 NBPF19A0A087WUL8 3843 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 TCRBV16S1A1N1A0A5B0 115 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 HMX2A2RU54 273 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 WIPF3A6NGB9 483 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 URADA6NGE7 173 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 FAM227AF5H4B4 570 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 TGFBR3LH3BV60 316 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 B4GALT2O60909 372 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 EDN3P14138 238 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 TFEBP19484 476 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 MAOAP21397 527 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 SPRP35270 261 aaPredicted RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 HNRNPFP52597 415 aaKnown RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 SKP1P63208 163 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 IRF9Q00978 393 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 SRSF11Q05519 484 aaKnown RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 NAB1Q13506 487 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 BMPR2Q13873 1038 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 E2F2Q14209 437 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 EXT1Q16394 746 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 ADPRMQ3LIE5 342 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 CDKL4Q5MAI5 379 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 SULT1C3Q6IMI6 304 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 CENPLQ8N0S6 344 aaPredicted RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 KIF2BQ8N4N8 673 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 TMEM52Q8NDY8 209 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 M1APQ8TC57 530 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 MAGEB10Q96LZ2 347 aaPredicted RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 QRFPRQ96P65 431 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 LPAR4Q99677 370 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 EHD1Q9H4M9 534 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 ALG9Q9H6U8 611 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 KCNK13Q9HB14 408 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 NECTIN3Q9NQS3 549 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 IGSF5Q9NSI5 407 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 OLAHQ9NV23 265 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 PLEKHB1Q9UF11 243 aaPredicted RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 PTBP2Q9UKA9 531 aaKnown RBP12.25□□□□□ -0.45
LIG1-212ENST00000596549 RNF112Q9ULX5 631 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 CLDN16Q9Y5I7 305 aa12.25□□□□□ -0.45
LIG1-212ENST00000596549 A1L4Q6 167 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 LRIT2A6NDA9 550 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 SAGE2PA6NJ88 616 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 A8MUI8 341 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 UBXN8O00124 270 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ERI3O43414 337 aaKnown RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 KERAO60938 352 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 STK16O75716 305 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 RNH1P13489 461 aaKnown RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 GSTM2P28161 218 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 OR4D2P58180 307 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 STXBP1P61764 594 aaKnown RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 PMP22Q01453 160 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 RUNX2Q13950 521 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 DOC2AQ14183 400 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ELOAQ14241 798 aaKnown RBP12.24□□□□□ -0.45
LIG1-212ENST00000596549 PDK4Q16654 411 aa12.24□□□□□ -0.45
LIG1-212ENST00000596549 ACER2Q5QJU3 275 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms