RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 CLN6Q9NWW5 311 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 FTSJ1Q9UET6 329 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 ZNF451Q9Y4E5 1061 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 PCM1Q15154 2024 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 HELZP42694 1942 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 MGAT4DA6NG13 374 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 IDH3BO43837 385 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 PCDH7O60245 1069 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 PSIP1O75475 530 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 ABLIM3O94929 683 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 SLCO2B1O94956 709 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 CCNB2O95067 398 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 OLFM2O95897 454 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 GKP32189 559 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 RCVRNP35243 200 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 NR4A2P43354 598 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 MAPK9P45984 424 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 ACLYP53396 1101 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 EEF1A2Q05639 463 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 SCARB2Q14108 478 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 VEPH1Q14D04 833 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 TAF12Q16514 161 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 TSTQ16762 297 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 MEDAGQ5VYS4 303 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 TPGS2Q68CL5 300 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 PLAG1Q6DJT9 500 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 THOC7Q6I9Y2 204 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 TMC5Q6UXY8 1006 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 CPXM2Q8N436 756 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 RNF175Q8N4F7 328 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 OXR1Q8N573 874 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 ADAMTS19Q8TE59 1207 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 UTP15Q8TED0 518 aaKnown RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 BCL7CQ8WUZ0 217 aaPredicted RBP12.72□□□□□ -0.37
VRK3-209ENST00000594948 ASZ1Q8WWH4 475 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 TP53INP1Q96A56 240 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 VOPP1Q96AW1 172 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 ATG10Q9H0Y0 220 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 RNF167Q9H6Y7 350 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 TMPRSS11EQ9UL52 423 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 GABRQQ9UN88 632 aa12.72□□□□□ -0.37
VRK3-209ENST00000594948 E7EQ34 232 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 QSOX1O00391 747 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 SCG5P05408 212 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 C1SP09871 688 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 LHCGRP22888 699 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 TCEA1P23193 301 aaKnown RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 CCND3P30281 292 aaPredicted RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 DDOSTP39656 456 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 SPINT3P49223 89 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 GATMP50440 423 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 COPZ1P61923 177 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 GPR50Q13585 617 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 PTGES3Q15185 160 aaKnown RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 LRRC26Q2I0M4 334 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 SOWAHCQ53LP3 525 aaPredicted RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 DGKKQ5KSL6 1271 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 TMEM201Q5SNT2 666 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 TRIM40Q6P9F5 258 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 RNF180Q86T96 592 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 TMEM173Q86WV6 379 aaPredicted RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 NLGN4XQ8N0W4 816 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 CELF2-AS1Q8N7Q2 184 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 CDC26Q8NHZ8 85 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 MAL2Q969L2 176 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 REPS1Q96D71 796 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 OR2A14Q96R47 310 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 BBS2Q9BXC9 721 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 CPEB1Q9BZB8 566 aaKnown RBP12.71□□□□□ -0.38
VRK3-209ENST00000594948 SUV39H2Q9H5I1 410 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 REEP4Q9H6H4 257 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 SGK2Q9HBY8 427 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 SLC25A19Q9HC21 320 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 C1GALT1Q9NS00 363 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 ACER3Q9NUN7 267 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 NDOR1Q9UHB4 597 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 LRFN2Q9ULH4 789 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 YIPF1Q9Y548 306 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 ENPP4Q9Y6X5 453 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 DSPPQ9NZW4 1301 aa12.71□□□□□ -0.38
VRK3-209ENST00000594948 PRAMEF25A6NGN4 478 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 TBKBP1A7MCY6 615 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 NT5C1B-RDH14C9J2C7 533 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 H3BQ06 376 aaPredicted RBP12.7□□□□□ -0.38
VRK3-209ENST00000594948 ARHGAP33O14559 1287 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 RHCEP18577 417 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 AQP1P29972 269 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 CRATP43155 626 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 RPS5P46782 204 aaKnown RBP12.7□□□□□ -0.38
VRK3-209ENST00000594948 PRIM2P49643 509 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 CRISP1P54107 249 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 PCBP3P57721 371 aaKnown RBP12.7□□□□□ -0.38
VRK3-209ENST00000594948 SNRPGP62308 76 aaKnown RBP12.7□□□□□ -0.38
VRK3-209ENST00000594948 LMAN2Q12907 356 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 PDE7AQ13946 482 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 CARTPTQ16568 116 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 BBS7Q8IWZ6 715 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 CLIP4Q8N3C7 705 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 FAM181AQ8N9Y4 354 aa12.7□□□□□ -0.38
VRK3-209ENST00000594948 IL17RCQ8NAC3 791 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms