RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 HS3ST1O14792 307 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 GPC4O75487 556 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 OR2J2O76002 312 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 CRTAMO95727 393 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 RFPL3SP0C7P2 107 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 LOXL1Q08397 574 aaPredicted RBP14.87□□□□□ -0.03
VPS53-218ENST00000575207 FAM27E3Q08E93 113 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 MPP3Q13368 585 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 MSLNQ13421 630 aaPredicted RBP14.87□□□□□ -0.03
VPS53-218ENST00000575207 CYB5R2Q6BCY4 276 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 TTC23LQ6PF05 361 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 ZNF704Q6ZNC4 412 aaPredicted RBP14.87□□□□□ -0.03
VPS53-218ENST00000575207 RTL4Q6ZR62 310 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 PDSS2Q86YH6 399 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 PIANPQ8IYJ0 282 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 RASGEF1CQ8N431 466 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 C9orf106Q8NAJ2 232 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 B3GNT7Q8NFL0 401 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 NEK11Q8NG66 645 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 ZFAND2BQ8WV99 257 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 RNF157Q96PX1 679 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 FCRL5Q96RD9 977 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 TRIB1Q96RU8 372 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 SACM1LQ9NTJ5 587 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 UTP6Q9NYH9 597 aaKnown RBP14.87□□□□□ -0.03
VPS53-218ENST00000575207 IMPACTQ9P2X3 320 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 PCYOX1Q9UHG3 505 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 PPIEQ9UNP9 301 aaKnown RBP14.87□□□□□ -0.03
VPS53-218ENST00000575207 ATG4BQ9Y4P1 393 aa14.87□□□□□ -0.03
VPS53-218ENST00000575207 RDH16O75452 317 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 ALX3O95076 343 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 IGHV4-39P01824 125 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 FHP07954 510 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 GZMAP12544 262 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 EEF1GP26641 437 aaKnown RBP14.86□□□□□ -0.03
VPS53-218ENST00000575207 CCNFP41002 786 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 SOX3P41225 446 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 HSPA14Q0VDF9 509 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 RNF187Q5TA31 235 aaPredicted RBP14.86□□□□□ -0.03
VPS53-218ENST00000575207 TMEM214Q6NUQ4 689 aaKnown RBP14.86□□□□□ -0.03
VPS53-218ENST00000575207 PACS1Q6VY07 963 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 MICALCLQ6ZW33 695 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 LRRC25Q8N386 305 aaPredicted RBP14.86□□□□□ -0.03
VPS53-218ENST00000575207 MLKLQ8NB16 471 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 SGCZQ96LD1 299 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 ZFP3Q96NJ6 502 aa14.86□□□□□ -0.03
VPS53-218ENST00000575207 C15orf38-AP3S2A0A0A6YYH1 394 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 TCRBV16S1A1N1A0A5B0 115 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 H7C0S8 307 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 SNPHO15079 494 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 AGTP01019 485 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 OR56A5P0C7T3 313 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 CREB1P16220 341 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 ZNF16P17020 682 aaPredicted RBP14.85□□□□□ -0.03
VPS53-218ENST00000575207 CCR7P32248 378 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 DIO3P55073 304 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 ITIH4Q14624 930 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 CCSMST1Q4G0I0 132 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 SYDE1Q6ZW31 735 aaPredicted RBP14.85□□□□□ -0.03
VPS53-218ENST00000575207 IRF2BP2Q7Z5L9 587 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 TBC1D20Q96BZ9 403 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 PTCHD1Q96NR3 888 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 RASL10BQ96S79 203 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 ANKHQ9HCJ1 492 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 ANAPC7Q9UJX3 599 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 NCKAP5O14513 1909 aa14.85□□□□□ -0.03
VPS53-218ENST00000575207 FREM3P0C091 2139 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 ALPK2Q86TB3 2170 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 IGHV4-30-2A0A087WSY4 118 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 IGKV3D-11A0A0A0MRZ8 115 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 GRID2IPA4D2P6 1211 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 KRT87PA6NCN2 255 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 LRRC14BA6NHZ5 514 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 PRKNO60260 465 aaPredicted RBP14.84□□□□□ -0.03
VPS53-218ENST00000575207 OR10H2O60403 315 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 JAK1P23458 1154 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 CPOXP36551 454 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 RBMXP38159 391 aaKnown RBP14.84□□□□□ -0.03
VPS53-218ENST00000575207 TRPC1P48995 793 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 DUSP8Q13202 625 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 NPNTQ6UXI9 565 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 QSOX2Q6ZRP7 698 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 VN1R4Q7Z5H5 301 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 HSCBQ8IWL3 235 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 MCUQ8NE86 351 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 ASZ1Q8WWH4 475 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 VMP1Q96GC9 406 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 RHNO1Q9BSD3 238 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 MYOTQ9UBF9 498 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 PCDHA13Q9Y5I0 950 aa14.84□□□□□ -0.03
VPS53-218ENST00000575207 BIRC6Q9NR09 4857 aa14.83□□□□□ -0.03
VPS53-218ENST00000575207 TMEM89A2RUT3 159 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 KIF5CO60282 957 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 ZFAND5O76080 213 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 RCBTB2O95199 551 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 C1orf105O95561 183 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 P04436 131 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 IGHV4-31P0DP07 118 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 CCL3P10147 92 aa14.83□□□□□ -0.04
VPS53-218ENST00000575207 HNF1AP20823 631 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 304.1 ms