RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TXNDC9O14530 226 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 MRASO14807 208 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 ZSCAN9O15535 394 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 ERI3O43414 337 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 AKAP10O43572 662 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 EEDO75530 441 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 DNAJC8O75937 253 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 KLHL18O94889 574 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 KRT16P08779 473 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 CSF2RBP32927 897 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 CPOXP36551 454 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 MLLT3P42568 568 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 SSR2P43308 183 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 MAPK12P53778 367 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 VSX2P58304 361 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 TRA2BP62995 288 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 SRSF11Q05519 484 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 DNAL1Q4LDG9 190 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 REP15Q6BDI9 236 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 TMEM71Q6P5X7 295 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 IKBIPQ70UQ0 350 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PRSS42Q7Z5A4 293 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 CSNK1A1LQ8N752 337 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PCYOX1LQ8NBM8 494 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 KCT2Q8NC54 265 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PRSS33Q8NF86 280 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 CDC26Q8NHZ8 85 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 FBXO27Q8NI29 283 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 IFI44Q8TCB0 444 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 UTP15Q8TED0 518 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 VPS33AQ96AX1 596 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 TEFMQ96QE5 360 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PRPF18Q99633 342 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 NPAS2Q99743 824 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 C17orf62Q9BQA9 187 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 ROGDIQ9GZN7 287 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 IRF2BPLQ9H1B7 796 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 LRRN3Q9H3W5 708 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PRDM7Q9NQW5 492 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 SOHLH2Q9NX45 425 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 NDE1Q9NXR1 346 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 KLHL3Q9UH77 587 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 LEF1Q9UJU2 399 aaPredicted RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 PLCL2Q9UPR0 1127 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 BTBD3Q9Y2F9 522 aa13.03□□□□□ -0.32
CCDC40-209ENST00000573474 SNRNP200O75643 2136 aaKnown RBP13.03□□□□□ -0.32
CCDC40-209ENST00000573474 A0A0A6YYD5 115 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 CFAP73A6NFT4 308 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 TOX3O15405 576 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 P2RX6O15547 441 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 FLRT2O43155 660 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SH3BP5O60239 455 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 LRATO95237 230 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 LDOC1O95751 146 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 GBAP04062 536 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 EIF2S1P05198 315 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 RPLP0P05388 317 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SMIM10L1P0DMW3 83 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ITGAXP20702 1163 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ATP5A1P25705 553 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 S100A3P33764 101 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 HPCAL1P37235 193 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 RPL3P39023 403 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ARL4DP49703 201 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 NUDT2P50583 147 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 DGKQP52824 942 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 TAS2R50P59544 299 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 RAB8AP61006 207 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 CCL7P80098 99 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 HSD11B2P80365 405 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SLC25A3Q00325 362 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 C2orf80Q0P641 193 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SLC14A1Q13336 389 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 TLR1Q15399 786 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SF3A2Q15428 464 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 CLPPQ16740 277 aaPredicted RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 DPY19L1Q2PZI1 675 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 HKDC1Q2TB90 917 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 FAM174BQ3ZCQ3 159 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 TIGD2Q4W5G0 525 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 FAM71E1Q6IPT2 247 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 C16orf89Q6UX73 402 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 HACD2Q6Y1H2 254 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ABHD13Q7L211 337 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 R3HCC1LQ7Z5L2 792 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 KMT5CQ86Y97 462 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 DSELQ8IZU8 1212 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 TMEM132CQ8N3T6 1108 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ZCCHC7Q8N3Z6 543 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 KIF2BQ8N4N8 673 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 NUDT8Q8WV74 236 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 GFM2Q969S9 779 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 SMIM10Q96HG1 83 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 CNDP2Q96KP4 475 aaKnown RBP13.02□□□□□ -0.33
CCDC40-209ENST00000573474 REEP4Q9H6H4 257 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 GID8Q9NWU2 228 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 ATP6V1HQ9UI12 483 aa13.02□□□□□ -0.33
CCDC40-209ENST00000573474 A0A088AWK7 358 aa13.01□□□□□ -0.33
CCDC40-209ENST00000573474 A0A0G2JN53 185 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms