RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IFT20Q8IY31 132 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 KLHDC8AQ8IYD2 350 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 IQCKQ8N0W5 287 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ARHGEF39Q8N4T4 335 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 NOA1Q8NC60 698 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 UBE2E3Q969T4 207 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 PNPLA2Q96AD5 504 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 C8orf44Q96CB5 159 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 SEC16BQ96JE7 1060 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 FAR2Q96K12 515 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 PSMG3-AS1Q96PY0 264 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 TUBB6Q9BUF5 446 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 GRIP2Q9C0E4 1043 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 PITHD1Q9GZP4 211 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 CDC42EP4Q9H3Q1 356 aaKnown RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 ACSS3Q9H6R3 686 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ALG9Q9H6U8 611 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 ZNF552Q9H707 407 aaPredicted RBP7.66□□□□□ -1.18
VPS53-214ENST00000572607 NINJ2Q9NZG7 142 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 VPS4AQ9UN37 437 aa7.66□□□□□ -1.18
VPS53-214ENST00000572607 A0A087WUV0 522 aaPredicted RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 A0A096LPK6 155 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ZNF860A6NHJ4 632 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ANKDD1BA6NHY2 528 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 MASP2O00187 686 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 CCNT2O60583 730 aaKnown RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 KERAO60938 352 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 KRT38O76015 456 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 BMP10O95393 424 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ACSL3O95573 720 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 C1QAP02745 245 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 SERPINA7P05543 415 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 SERPINA6P08185 405 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ZNF888P0CJ79 500 aaPredicted RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 SLC35E2BP0CK96 405 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 COX6A1P12074 109 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 GP1BBP13224 206 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 GFAPP14136 432 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 GGT5P36269 586 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 HNF4AP41235 474 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 MSH2P43246 934 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 AGTR2P50052 363 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 SERPINB9P50453 376 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 MLLT10P55197 1068 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 RAB8AP61006 207 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 TGM3Q08188 693 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 POU4F2Q12837 409 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 LAPTM5Q13571 262 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 BMPR2Q13873 1038 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 UBAP2LQ14157 1087 aaKnown RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 OR4D1Q15615 310 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 XKR6Q5GH73 641 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 CRB2Q5IJ48 1285 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 TOR1AIP1Q5JTV8 583 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 LGSNQ5TDP6 509 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 SLC6A19Q695T7 634 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 JMJD6Q6NYC1 403 aaPredicted RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 IGFL3Q6UXB1 125 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ISLR2Q6UXK2 745 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 TMIGD1Q6UXZ0 262 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 PRSS41Q7RTY9 318 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 TMEM151BQ8IW70 566 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 PDPRQ8NCN5 879 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ZNF740Q8NDX6 193 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 CPT1CQ8TCG5 803 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 PTCD3Q96EY7 689 aaKnown RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 PEX11GQ96HA9 241 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 UBXN10Q96LJ8 280 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 OR1F2PQ96R84 312 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 WDR77Q9BQA1 342 aaPredicted RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 TMEM79Q9BSE2 394 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 EFCAB11Q9BUY7 163 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 RBCK1Q9BYM8 510 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 SLC29A3Q9BZD2 475 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 VPS11Q9H270 941 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 EHD1Q9H4M9 534 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 NT5DC2Q9H857 520 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 CLK4Q9HAZ1 481 aaKnown RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 SNX15Q9NRS6 342 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 LUZP4Q9P127 313 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 OPTCQ9UBM4 332 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 DMGDHQ9UI17 866 aaKnown RBP7.65□□□□□ -1.18
VPS53-214ENST00000572607 TEKT2Q9UIF3 430 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 B3GNT3Q9Y2A9 372 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 ANGPTL3Q9Y5C1 460 aa7.65□□□□□ -1.18
VPS53-214ENST00000572607 NOTCH2Q04721 2471 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 SPTBP11277 2137 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 LOC102723996A0A087X1L8 192 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 IGHV1-45A0A0A0MS14 117 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 A0A1W2PQ72 361 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 DYTNA2CJ06 578 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 POC1B-GALNT4F8VUJ3 575 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 K7EPI3 171 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 TAPBPO15533 448 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CHST10O43529 356 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 GALR3O60755 368 aaPredicted RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 JRKO75564 520 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CLEC3AO75596 197 aa7.64□□□□□ -1.19
VPS53-214ENST00000572607 CDC123O75794 336 aaPredicted RBP7.64□□□□□ -1.19
VPS53-214ENST00000572607 SORBS2O94875 1100 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms