RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 GPR87Q9BY21 358 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 SLC29A3Q9BZD2 475 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 SLC6A16Q9GZN6 736 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 NKIRAS1Q9NYS0 192 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 KCND3Q9UK17 655 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 ZNF490Q9ULM2 529 aaPredicted RBP19.57■□□□□ 0.72
VPS53-210ENST00000571456 SNX6Q9UNH7 406 aa19.57■□□□□ 0.72
VPS53-210ENST00000571456 C9J4A7 227 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 H0YIG0 161 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 NPHS1O60500 1241 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 ESRRBO95718 433 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 ALBP02768 609 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 DHRS4L1P0CG22 281 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 CD22P20273 847 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 STAT5AP42229 794 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 AVPR1BP47901 424 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 SERPINB4P48594 390 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 GPS2Q13227 327 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 HKDC1Q2TB90 917 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 ZNF385CQ66K41 422 aaPredicted RBP19.56■□□□□ 0.72
VPS53-210ENST00000571456 GPRIN3Q6ZVF9 776 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.56■□□□□ 0.722e-7■■■■■ 278.5
VPS53-210ENST00000571456 KIRREL3Q8IZU9 778 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 ARHGEF39Q8N4T4 335 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 OR52B6Q8NGF0 335 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 TRPC4APQ8TEL6 797 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 CREB3L4Q8TEY5 395 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 FKBP10Q96AY3 582 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 CMTM7Q96FZ5 175 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 NSUN5Q96P11 429 aaKnown RBP19.56■□□□□ 0.72
VPS53-210ENST00000571456 CENPKQ9BS16 269 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 ADNPQ9H2P0 1102 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 GSTO2Q9H4Y5 243 aa19.56■□□□□ 0.72
VPS53-210ENST00000571456 EML4Q9HC35 981 aaKnown RBP19.56■□□□□ 0.72
VPS53-210ENST00000571456 FER1L5A0AVI2 2057 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 TMEM120BA0PK00 339 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 FOXE1O00358 373 aaPredicted RBP19.55■□□□□ 0.72
VPS53-210ENST00000571456 P2RX6O15547 441 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 NSA2O95478 260 aaKnown RBP19.55■□□□□ 0.72
VPS53-210ENST00000571456 KRT6AP02538 564 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 KRT6BP04259 564 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 RAB40ALP0C0E4 278 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 ALAS2P22557 587 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 ALDH3A1P30838 453 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 KRT6CP48668 564 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 CDH13P55290 713 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 IFT88Q13099 833 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 ADPRMQ3LIE5 342 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 TMEM35AQ53FP2 167 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 HIST2H2BCQ6DN03 193 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 CHSY3Q70JA7 882 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 TIPARPQ7Z3E1 657 aaKnown RBP19.55■□□□□ 0.72
VPS53-210ENST00000571456 NUDCD3Q8IVD9 361 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 SLC38A9Q8NBW4 561 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 OR4F6Q8NGB9 312 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 ZNF473Q8WTR7 871 aaKnown RBP19.55■□□□□ 0.72
VPS53-210ENST00000571456 MR1Q95460 341 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 GAL3ST3Q96A11 431 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 C10orf90Q96M02 699 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 ROGDIQ9GZN7 287 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 C12orf65Q9H3J6 166 aaKnown RBP19.55■□□□□ 0.72
VPS53-210ENST00000571456 ANKHQ9HCJ1 492 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 PADI2Q9Y2J8 665 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 RNF11Q9Y3C5 154 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 PCDHGA6Q9Y5G7 932 aa19.55■□□□□ 0.72
VPS53-210ENST00000571456 RECKO95980 971 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 SERPIND1P05546 499 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 HSD3B1P14060 373 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 ALOX12P18054 663 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 GRK2P25098 689 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 HSD3B2P26439 372 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 CASRP41180 1078 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 TSFMP43897 325 aaKnown RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 ZRSR2Q15696 482 aaKnown RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 CPSF6Q16630 551 aaKnown RBP eCLIP19.54■□□□□ 0.72
VPS53-210ENST00000571456 NKAIN1Q4KMZ8 207 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 HHATQ5VTY9 493 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 FRG2Q64ET8 278 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 TTC19Q6DKK2 380 aaPredicted RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 AFAP1L2Q8N4X5 818 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 FRG2BQ96QU4 278 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 GATA5Q9BWX5 397 aaPredicted RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 ELOVL6Q9H5J4 265 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 SYNPO2LQ9H987 977 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 ZNF304Q9HCX3 659 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 NMRK1Q9NWW6 199 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 DHCR7Q9UBM7 475 aaKnown RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 NDOR1Q9UHB4 597 aa19.54■□□□□ 0.72
VPS53-210ENST00000571456 GPN3Q9UHW5 284 aaPredicted RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 NXT1Q9UKK6 140 aaKnown RBP19.54■□□□□ 0.72
VPS53-210ENST00000571456 LRIT2A6NDA9 550 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 CTSBP07858 339 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 IL10P22301 178 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 PTX3P26022 381 aaPredicted RBP19.53■□□□□ 0.72
VPS53-210ENST00000571456 RPS15P62841 145 aaKnown RBP19.53■□□□□ 0.72
VPS53-210ENST00000571456 CYP4F2P78329 520 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 DSG2Q14126 1118 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 PRAMEF17Q5VTA0 474 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 TRIM40Q6P9F5 258 aa19.53■□□□□ 0.72
VPS53-210ENST00000571456 TRIM42Q8IWZ5 723 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms