RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MINDY4Q4G0A6 757 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 CST9Q5W186 159 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 ANKRD34AQ69YU3 496 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 ZCCHC12Q6PEW1 402 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 CNSTQ6PJW8 725 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 FAM131AQ6UXB0 335 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 OR6B3Q8NGW1 331 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 DNAJB8Q8NHS0 232 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 GPR151Q8TDV0 419 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 WFIKKN2Q8TEU8 576 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 ARNTL2Q8WYA1 636 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 SLC38A4Q969I6 547 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 TMBIM1Q969X1 311 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 TOX2Q96NM4 488 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 DCDC2Q9UHG0 476 aa10.46□□□□□ -0.74
CLK3-226ENST00000569406 GOLGA4Q13439 2230 aaKnown RBP10.46□□□□□ -0.74
CLK3-226ENST00000569406 KPNA7A9QM74 516 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CDC7O00311 574 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CLDN5O00501 218 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ARPC2O15144 300 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 LZTS3O60299 673 aaPredicted RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 GADD45GO95257 159 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 GOT1P17174 413 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ADORA2BP29275 332 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 SCNN1AP37088 669 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 AVPR1AP37288 418 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ARL4AP40617 200 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FBXO47Q5MNV8 452 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 PRAMEF13Q5VWM6 474 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 HFE2Q6ZVN8 426 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CMC1Q7Z7K0 106 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 HS3ST5Q8IZT8 346 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 OR9I1Q8NGQ6 314 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 SPACA7Q96KW9 195 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 JAM3Q9BX67 310 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 PCDHB5Q9Y5E4 795 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 NUP205Q92621 2012 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 TMEM82A0PJX8 343 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 MYADML2A6NDP7 307 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 H3BM21 787 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 M0R233 179 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FFAR3O14843 346 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 GPR42O15529 346 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 RGS10O43665 173 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 TSPAN12O95859 305 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 AGR2O95994 175 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 PAICSP22234 425 aaKnown RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 PYCR3Q53H96 274 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 SYPL2Q5VXT5 272 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 LAIR2Q6ISS4 152 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 NOTUMQ6P988 496 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 PLEKHH3Q7Z736 793 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CTU1Q7Z7A3 348 aaKnown RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 ATCAYQ86WG3 371 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ZNF669Q96BR6 464 aaPredicted RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 LRCH3Q96II8 777 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ZFP42Q96MM3 310 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 REG4Q9BYZ8 158 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 OR51E2Q9H255 320 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ZNF334Q9HCZ1 680 aaPredicted RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 ACOT13Q9NPJ3 140 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FZD10Q9ULW2 581 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 DHRS7Q9Y394 339 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CLDN24A6NM45 220 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 RHPN2P1A8MT19 583 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FAM72CH0Y354 149 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CACNB4O00305 520 aaPredicted RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 GNGT2O14610 69 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 LDLRAD4O15165 306 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 GRID2O43424 1007 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 PLOD3O60568 738 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FAM20BO75063 409 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 RAC2P15153 192 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 NFKB1P19838 968 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 SSTR4P31391 388 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 RAB33AQ14088 237 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 GANABQ14697 944 aaKnown RBP10.45□□□□□ -0.74
CLK3-226ENST00000569406 CHRNA6Q15825 494 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ALG11Q2TAA5 492 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FAM72AQ5TYM5 149 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FAM72DQ6L9T8 149 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 AHSA2Q719I0 299 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 GPRIN1Q7Z2K8 1008 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 FAM72BQ86X60 149 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 LGMNQ99538 433 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 ITPAQ9BY32 194 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 AMBRA1Q9C0C7 1298 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 DNTTIP1Q9H147 329 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 UBP1Q9NZI7 540 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 CLCA2Q9UQC9 943 aa10.45□□□□□ -0.74
CLK3-226ENST00000569406 TMEM233B4DJY2 109 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TOXO94900 526 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 GP1BAP07359 652 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 ANXA6P08133 673 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 SNRPB2P08579 225 aaKnown RBP10.44□□□□□ -0.74
CLK3-226ENST00000569406 MYL3P08590 195 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 PTGFRP43088 359 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 TNFRSF17Q02223 184 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 CDK5R2Q13319 367 aa10.44□□□□□ -0.74
CLK3-226ENST00000569406 USF2Q15853 346 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms