RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-225	ENST00000569245	ZXDC	Q2QGD7	858 aa	Predicted RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	ATG16L1	Q676U5	607 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	METTL2B	Q6P1Q9	378 aa	Known RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	VN1R4	Q7Z5H5	301 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	ASPG	Q86U10	573 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	THOC6	Q86W42	341 aa	Known RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	UBTD2	Q8WUN7	234 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	SLC13A3	Q8WWT9	602 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	SLC5A11	Q8WWX8	675 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	PHF21B	Q96EK2	531 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	TMEM237	Q96Q45	408 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	OR4K3	Q96R72	315 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	NUDT9	Q9BW91	350 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	GATA5	Q9BWX5	397 aa	Predicted RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	ERVK-6	Q9BXR3	956 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	PTBP2	Q9UKA9	531 aa	Known RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	TNPO3	Q9Y5L0	923 aa	Known RBP	13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	HS3ST3B1	Q9Y662	390 aa		13.73	□□□□□ -0.21
COMMD4-225	ENST00000569245	NCF1B	A6NI72	391 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	NCF1C	A8MVU1	366 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	TMEM114	B3SHH9	223 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	SOCS6	O14544	535 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	FOXS1	O43638	330 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	LCMT2	O60294	686 aa	Known RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	NPHS1	O60500	1241 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	KLHL41	O60662	606 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	SNN	O75324	88 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	WISP1	O95388	367 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	HEXB	P07686	556 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	RPS17	P08708	135 aa	Known RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	SLC35G6	P0C7Q6	338 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	NCF1	P14598	390 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	ITGA3	P26006	1051 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	GGT5	P36269	586 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	EMP2	P54851	167 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	BST1	Q10588	318 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	AIMP2	Q13155	320 aa	Known RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	STX3	Q13277	289 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	FAM53B	Q14153	422 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	PCBP2	Q15366	365 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	ZNF678	Q5SXM1	525 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	CATSPERE	Q5SY80	951 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	IRAK1BP1	Q5VVH5	260 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	KIRREL2	Q6UWL6	708 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	LAPTM4B	Q86VI4	370 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	MFSD9	Q8NBP5	474 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	ABHD11	Q8NFV4	315 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	OR9A4	Q8NGU2	314 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	PPP1R14C	Q8TAE6	165 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	ZCCHC10	Q8TBK6	192 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	NEIL2	Q969S2	332 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	CNDP1	Q96KN2	507 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	ZNF317	Q96PQ6	595 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	MFRP	Q9BY79	579 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	SLC22A14	Q9Y267	594 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	MRPS2	Q9Y399	296 aa	Known RBP	13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	PCDHGB7	Q9Y5F8	929 aa		13.72	□□□□□ -0.21
COMMD4-225	ENST00000569245	TENM4	Q6N022	2769 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	TTLL8	A6PVC2	850 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	TAPBP	O15533	448 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	NDUFS4	O43181	175 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	DPM1	O60762	260 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ALOX12B	O75342	701 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	WDR47	O94967	919 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	SNUPN	O95149	360 aa	Known RBP	13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ZIC2	O95409	532 aa	Predicted RBP	13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ACPP	P15309	386 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	CXCR2	P25025	360 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	NAGLU	P54802	743 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	MAT1A	Q00266	395 aa	Known RBP	13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	MYBPC3	Q14896	1274 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	SYT16	Q17RD7	645 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	NADK2	Q4G0N4	442 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	UNC50	Q53HI1	259 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	MFSD4B	Q5TF39	518 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	VWA5B1	Q5TIE3	1220 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	CES4A	Q5XG92	561 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	FAAH2	Q6GMR7	532 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	TMEM214	Q6NUQ4	689 aa	Known RBP	13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ZCCHC23	Q6ZST2	131 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	KLHDC8A	Q8IYD2	350 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ARHGEF39	Q8N4T4	335 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	AMER3	Q8N944	861 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	KCT2	Q8NC54	265 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	OR4K1	Q8NGD4	311 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	C8orf44	Q96CB5	159 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	TMEM79	Q9BSE2	394 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	ANKH	Q9HCJ1	492 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	C14orf105	Q9NVL8	296 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	THAP1	Q9NVV9	213 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	MAP4K5	Q9Y4K4	846 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	KCNE2	Q9Y6J6	123 aa		13.71	□□□□□ -0.21
COMMD4-225	ENST00000569245	IGLV3-12	A0A075B6K2	115 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245	TRBC2	A0A5B9	178 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245	IDS	B3KWA1	339 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245	TCP11X1	B4DZS4	312 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245		H0YIG0	161 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245	SGK494	L7N484	410 aa		13.7	□□□□□ -0.22
COMMD4-225	ENST00000569245	SIX3	O95343	332 aa	Predicted RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms