RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AIMP2Q13155 320 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 RCN2Q14257 317 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 SYT16Q17RD7 645 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 CCDC153Q494R4 210 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 LACTB2Q53H82 288 aaPredicted RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 DCAF10Q5QP82 559 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 PDSS2Q86YH6 399 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 LAS2Q8IYD9 372 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 PPP4R1Q8TF05 950 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 SLC25A23Q9BV35 468 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 ERVK-6Q9BXR3 956 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 ROPN1BQ9BZX4 212 aaPredicted RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 REXO4Q9GZR2 422 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 SLC25A18Q9H1K4 315 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 ROPN1Q9HAT0 212 aaPredicted RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 TMEM216Q9P0N5 145 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 PCTPQ9UKL6 214 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 RAB21Q9UL25 225 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 TSC22D4Q9Y3Q8 395 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 PCDHGA9Q9Y5G4 932 aaKnown RBP12.29□□□□□ -0.44
CLK3-224ENST00000568605 HS3ST3B1Q9Y662 390 aa12.29□□□□□ -0.44
CLK3-224ENST00000568605 TLDC2A0PJX2 215 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 LRIT2A6NDA9 550 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 COPEO14579 308 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 B3GALT2O43825 422 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 ERLIN1O75477 346 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 CLDN9O95484 217 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 OTCP00480 354 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 ALPPP05187 535 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 FHP07954 510 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 C8orf89P0DMQ9 161 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 RNH1P13489 461 aaKnown RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 CD22P20273 847 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 ATP5F1P24539 256 aaPredicted RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 HNRNPH1P31943 449 aaKnown RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 PIK3CBP42338 1070 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 PGDP52209 483 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 FOXL2P58012 376 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 NAA20P61599 178 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 HYAL2Q12891 473 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 DDX39BQ13838 428 aaKnown RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 ADPRMQ3LIE5 342 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 GGTA1PQ4G0N0 100 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 TMEM35AQ53FP2 167 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 CHSY3Q70JA7 882 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 HPS6Q86YV9 775 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 EXD3Q8N9H8 876 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 OR7G3Q8NG95 312 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 RDH11Q8TC12 318 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 TBC1D20Q96BZ9 403 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 MS4A6EQ96DS6 147 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 CMTM7Q96FZ5 175 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 PEX11GQ96HA9 241 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 KCNC2Q96PR1 638 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 NPLQ9BXD5 320 aaPredicted RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 C1QTNF3Q9BXJ4 246 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 MS4A8Q9BY19 250 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 TRIM55Q9BYV6 548 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 NOL11Q9H8H0 719 aaKnown RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 ATP13A2Q9NQ11 1180 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 RIC8BQ9NVN3 520 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 GPR83Q9NYM4 423 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 FBXL4Q9UKA2 621 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 MKL2Q9ULH7 1088 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 GRID1Q9ULK0 1009 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 MRPS33Q9Y291 106 aaKnown RBP12.28□□□□□ -0.44
CLK3-224ENST00000568605 PCDHGB7Q9Y5F8 929 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 SPACA6W5XKT8 324 aa12.28□□□□□ -0.44
CLK3-224ENST00000568605 A0A1W2PPM1 405 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 SYNDIG1LA6NDD5 238 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 LRRC14BA6NHZ5 514 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 H0YIV9 168 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 SOCS6O14544 535 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 PRAMEF4O60810 478 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 ALOX12BO75342 701 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 DNAJB5O75953 348 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 HPP00738 406 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 MYL2P10916 166 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 CRHR1P34998 444 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 TSFMP43897 325 aaKnown RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 CCL11P51671 97 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 RAP1GDS1P52306 607 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 MTTPP55157 894 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 C19orf57Q0VDD7 668 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 PRAMEF9Q5VWM5 478 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 TTC19Q6DKK2 380 aaPredicted RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 TCTN3Q6NUS6 607 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 CROCCP2Q86T23 111 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 GALNT16Q8N428 558 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 L3MBTL4Q8NA19 623 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 CCDC63Q8NA47 563 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 OR11G2Q8NGC1 345 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 OR2W6PQ8NHA6 318 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 ZNF483Q8TF39 744 aaPredicted RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 ZNF473Q8WTR7 871 aaKnown RBP12.27□□□□□ -0.45
CLK3-224ENST00000568605 ABHD17AQ96GS6 310 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 APOPT1Q96IL0 206 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 SERINC2Q96SA4 455 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 NTMT1Q9BV86 223 aa12.27□□□□□ -0.45
CLK3-224ENST00000568605 SEMA4BQ9NPR2 832 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms