RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CRY2Q49AN0 593 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 ZNF506Q5JVG8 444 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 TMED8Q6PL24 325 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 PHLDB2Q86SQ0 1253 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 PRUNE1Q86TP1 453 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 FAM219AQ8IW50 185 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 Q8NFD4 153 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 OR6J1Q8NGC5 347 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 OR4Q3Q8NH05 313 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 SPSB1Q96BD6 273 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 PGAP3Q96FM1 320 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 CFAP57Q96MR6 1250 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 NDNQ99608 321 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 PHPT1Q9NRX4 125 aaPredicted RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 AGTPBP1Q9UPW5 1226 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 MRPL11Q9Y3B7 192 aaKnown RBP2.16□□□□□ -2.06
VPS35-207ENST00000568191 POGZQ7Z3K3 1410 aa2.16□□□□□ -2.06
VPS35-207ENST00000568191 RPL37AP8A6NKH3 93 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 FAM220BPB1ANY3 271 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 TMEM150CB9EJG8 249 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 UBE2CO00762 179 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 ZNF749O43361 778 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 ECE2O60344 883 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 RENP00797 406 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 QDPRP09417 244 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 TCF4P15884 667 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 MGMTP16455 207 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 ACAT1P24752 427 aaKnown RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 PSMA3P25788 255 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 FEN1P39748 380 aaKnown RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 CASP2P42575 452 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 OR3A3P47888 321 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 PRELPP51888 382 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 IL10RBQ08334 325 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 GRB14Q14449 540 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 ECSCRQ19T08 205 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 LACTB2Q53H82 288 aaPredicted RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 SPANXN4Q5MJ08 99 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 MUC21Q5SSG8 566 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 SUSD4Q5VX71 490 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 CST9LP1Q5W188 147 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 RPUSD3Q6P087 351 aaKnown RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 RBPMS2Q6ZRY4 209 aaKnown RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 MCM10Q7L590 875 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 RPAINQ86UA6 219 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 VASH2Q86V25 355 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 BANPQ8N9N5 519 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 MRAPQ8TCY5 172 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 SSC4DQ8WTU2 575 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 C11orf52Q96A22 123 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 ZNF558Q96NG5 402 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 YTHDF1Q9BYJ9 559 aaKnown RBP2.15□□□□□ -2.07
VPS35-207ENST00000568191 WDR41Q9HAD4 459 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 THYN1Q9P016 225 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 BCCIPQ9P287 314 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS35-207ENST00000568191 PILRAQ9UKJ1 303 aa2.15□□□□□ -2.07
VPS35-207ENST00000568191 COL16A1Q07092 1604 aaPredicted RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 TRAV18A0A075B6X5 111 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 IGHV3-16A0A0C4DH30 117 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 MYBL1P10243 752 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 ACHEP22303 614 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 BDNFP23560 247 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 DUTP33316 252 aaKnown RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 BRCC3P46736 316 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 MTCP1P56278 107 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 IGLV3-21P80748 117 aaPredicted RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 MZT1Q08AG7 82 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 CAMK2DQ13557 499 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PPA1Q15181 289 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 FAM174BQ3ZCQ3 159 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 SPOUT1Q5T280 376 aaKnown RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 LINC00242Q5T6M2 205 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 LEMD1Q68G75 181 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 TCEAL6Q6IPX3 200 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 KRT80Q6KB66 452 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 DHRS11Q6UWP2 260 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 C15orf52Q6ZUT6 534 aaKnown RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 Q71RC1 249 aaPredicted RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 C5orf24Q7Z6I8 188 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PIGWQ7Z7B1 504 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PRPF39Q86UA1 669 aaKnown RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 CARM1Q86X55 608 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 KRTAP11-1Q8IUC1 163 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 APCDD1Q8J025 514 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 TEX26Q8N6G2 289 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PI4KAP1Q8N8J0 262 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 XXYLT1Q8NBI6 393 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 MRPS27Q92552 414 aaKnown RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 BADQ92934 168 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PHYHIPLQ96FC7 376 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 AK8Q96MA6 479 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 GDAP1L1Q96MZ0 367 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 SPATA33Q96N06 139 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 ALKBH3Q96Q83 286 aaPredicted RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 PCDHB18PQ96TA0 734 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 CCDC28BQ9BUN5 200 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 FZD8Q9H461 694 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 C10orf88Q9H8K7 445 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 PDFQ9HBH1 243 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 IL1RAPQ9NPH3 570 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms